Re: [PyMOL] PyMol: incomplete replacement of b- and q-factors

2019-09-13 Thread Thomas Holder
Hi Joe, There can be atoms without coordinates. In particular, when loading mmCIF files, PyMOL fills in dummy-CA atoms for missing residues, to provide a complete sequence display in the sequence viewer. "alter" iterates over all atoms, including those without coordinates. "iterate_state" only

[PyMOL] PyMol: incomplete replacement of b- and q-factors

2019-09-12 Thread Heffron, Joseph
Hello all, I am trying to color several proteins by different factors, e.g., distance from a given point (here the origin). To do this, I replace the q-factor (or b-factor) with my variable of choice. However, most of my files have one or a few residues that are for some reason not affected by