I vastly prefer calling the python program from pymol
You can call any python program using pymol as:
pymol -r program.py — arg1 arg2 arg3
Or, my full preferred method is:
pymol -qrck program.py — arg1 arg2 arg3
These make it quieter, stay on the command line, and not read the .pymolrc file
Dear PyMOLers,
I want to modify atomic coordinates in a python program and make
pictures with PyMOL for making a movie.
In your experience, is it better to call the python program from PyMOL
or to call PyMOL from the python program?
And could you please give me any good pointer for your
