[PyMOL] Questions about pymol plugins
Dear PyMol Users! I've decided to make this topic for all questions wich could be arrise during working in diffent PyMol plugins. So My first question about installation of the plugins wich are separate python modules ( installed not via PyMolf itself) E.g I have old PyMol wicj lack CEalign plugin. I have CEalign source wich then I succesfull installed in my python. root@owntest:/home/own/Downloads/cealign-0.8-RBS# python setup.py build install running build running build_ext running install running install_lib running install_egg_info Writing /usr/local/lib/python2.6/dist-packages/cealign-0.8_RBS.egg-info but when I try use CEalign from pymol I've obtaind NameError: name 'cealign' is not defined How I could install such plugins correctly ? Thanks for help James -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Questions about pymol plugins
Have you told PyMOL to import the functions from a module? What have you written in PyMOL? /T Troels Emtekær Linnet Slotsvej 2 4300 Holbæk Mobil: +45 60210234 2011/11/24 James Starlight jmsstarli...@gmail.com Dear PyMol Users! I've decided to make this topic for all questions wich could be arrise during working in diffent PyMol plugins. So My first question about installation of the plugins wich are separate python modules ( installed not via PyMolf itself) E.g I have old PyMol wicj lack CEalign plugin. I have CEalign source wich then I succesfull installed in my python. root@owntest:/home/own/Downloads/cealign-0.8-RBS# python setup.py build install running build running build_ext running install running install_lib running install_egg_info Writing /usr/local/lib/python2.6/dist-packages/cealign-0.8_RBS.egg-info but when I try use CEalign from pymol I've obtaind NameError: name 'cealign' is not defined How I could install such plugins correctly ? Thanks for help James -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Questions about pymol plugins
Okay, well... You need to know more about python search paths and importing modules... You need to define and tell python to search in the directory where the CEaling script is. Then you need to import the module in PyMOL. Then you can use the function. Basically, you need to learn basic stuff of python. Please consider how you ask questions. Best Troels Troels Emtekær Linnet Slotsvej 2 4300 Holbæk Mobil: +45 60210234 2011/11/24 James Starlight jmsstarli...@gmail.com Troels, no I just typed command name cealign ref, target on another loptop I have more modern version of pymol with prebuilt CE. Here I can just type CEalign :) James 2011/11/24 Troels Emtekær Linnet tlin...@gmail.com Have you told PyMOL to import the functions from a module? What have you written in PyMOL? /T Troels Emtekær Linnet Slotsvej 2 4300 Holbæk Mobil: +45 60210234 2011/11/24 James Starlight jmsstarli...@gmail.com Dear PyMol Users! I've decided to make this topic for all questions wich could be arrise during working in diffent PyMol plugins. So My first question about installation of the plugins wich are separate python modules ( installed not via PyMolf itself) E.g I have old PyMol wicj lack CEalign plugin. I have CEalign source wich then I succesfull installed in my python. root@owntest:/home/own/Downloads/cealign-0.8-RBS# python setup.py build install running build running build_ext running install running install_lib running install_egg_info Writing /usr/local/lib/python2.6/dist-packages/cealign-0.8_RBS.egg-info but when I try use CEalign from pymol I've obtaind NameError: name 'cealign' is not defined How I could install such plugins correctly ? Thanks for help James -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
