Re: [PyMOL] RNA stick depiction with filled-out rings
Hi Thomas, thinks work like a charm! Thanks a lot. Claus On Feb 11, 2014, at 10:50 AM, Thomas Holder wrote: > Hi Claus, > > this works for me: > > set cartoon_ring_mode, 1 > set cartoon_ring_finder, 4 > show cartoon > hide cartoon, elem P > > Cheers, > Thomas > > On 10 Feb 2014, at 15:03, Kuhn, Claus-Dieter wrote: > >> Hi Pymol users, >> >> I am trying to depict RNA as sticks, however with filled-out rings (bases >> and ribose). >> I have been going about doing this by combining cartoon view for the >> filled-out bases, using set_cartoon_radius=0 and stick view for the backbone. >> >> When doing this I am always left with a fine line of cartoon_tube, which I >> would love to be invisible. >> >> How can I make this line invisible? >> >> Thanks a lot. >> >> Claus > > -- > Thomas Holder > PyMOL Developer > Schrödinger, Inc. > -- Android apps run on BlackBerry 10 Introducing the new BlackBerry 10.2.1 Runtime for Android apps. Now with support for Jelly Bean, Bluetooth, Mapview and more. Get your Android app in front of a whole new audience. Start now. http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] RNA stick depiction with filled-out rings
Hi Claus, this works for me: set cartoon_ring_mode, 1 set cartoon_ring_finder, 4 show cartoon hide cartoon, elem P Cheers, Thomas On 10 Feb 2014, at 15:03, Kuhn, Claus-Dieter wrote: > Hi Pymol users, > > I am trying to depict RNA as sticks, however with filled-out rings (bases and > ribose). > I have been going about doing this by combining cartoon view for the > filled-out bases, using set_cartoon_radius=0 and stick view for the backbone. > > When doing this I am always left with a fine line of cartoon_tube, which I > would love to be invisible. > > How can I make this line invisible? > > Thanks a lot. > > Claus -- Thomas Holder PyMOL Developer Schrödinger, Inc. -- Android apps run on BlackBerry 10 Introducing the new BlackBerry 10.2.1 Runtime for Android apps. Now with support for Jelly Bean, Bluetooth, Mapview and more. Get your Android app in front of a whole new audience. Start now. http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] RNA stick depiction with filled-out rings
Hi Claus, Maybe this: fetch 1rna, async=0 as sticks show cartoon set cartoon_side_chain_helper, 1 set cartoon_ring_mode, 1 Cheers, -- Jason On Mon, Feb 10, 2014 at 2:03 PM, Kuhn, Claus-Dieter wrote: > Hi Pymol users, > > I am trying to depict RNA as sticks, however with filled-out rings (bases and > ribose). > I have been going about doing this by combining cartoon view for the > filled-out bases, using set_cartoon_radius=0 and stick view for the backbone. > > When doing this I am always left with a fine line of cartoon_tube, which I > would love to be invisible. > > How can I make this line invisible? > > Thanks a lot. > > Claus > -- > Androi apps run on BlackBerry 10 > Introducing the new BlackBerry 10.2.1 Runtime for Android apps. > Now with support for Jelly Bean, Bluetooth, Mapview and more. > Get your Android app in front of a whole new audience. Start now. > http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Android apps run on BlackBerry 10 Introducing the new BlackBerry 10.2.1 Runtime for Android apps. Now with support for Jelly Bean, Bluetooth, Mapview and more. Get your Android app in front of a whole new audience. Start now. http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] RNA stick depiction with filled-out rings
Hi Pymol users, I am trying to depict RNA as sticks, however with filled-out rings (bases and ribose). I have been going about doing this by combining cartoon view for the filled-out bases, using set_cartoon_radius=0 and stick view for the backbone. When doing this I am always left with a fine line of cartoon_tube, which I would love to be invisible. How can I make this line invisible? Thanks a lot. Claus -- Androi apps run on BlackBerry 10 Introducing the new BlackBerry 10.2.1 Runtime for Android apps. Now with support for Jelly Bean, Bluetooth, Mapview and more. Get your Android app in front of a whole new audience. Start now. http://pubads.g.doubleclick.net/gampad/clk?id=124407151&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
