The transform matrix you’re using is the identity matrix, so it won’t have any
effect.
-David
> On Jan 11, 2018, at 6:54 PM, Benjamin Bailly wrote:
>
> Hi Thomas,
>
> Thanks for your reply.
>
> So if I am correct, for my protein get_coords fetches a very large matrix of
> thousands and thou
Hi Thomas,
Thanks for your reply.
So if I am correct, for my protein get_coords fetches a very large matrix
of thousands and thousands of rows. This could prove very impractical if I
want to stores those coordinates in a script.
To circumvent this issue I tried the following but it did not seem
Hi Ben,
The coordinates argument must have a Nx3 shape, that means:
len(coordinates) = number of atoms
len(coordinates[0]) = 3
You can use numpy's reshape() function:
import numpy
coordinates = numpy.asfarray(coordinates).reshape((-1,3))
cmd.load_coords(coordinates, '%prot')
I recommend to pref
Hi everyone,
I have been scratching my head quite a bit on this one, I am sure there
must be a simple solution but I can't seem to figure it out.
In short, I would like to record the spacial coordinates of a protein so
that when I run my script I can fetch it from the PDB and place it exactly
whe