Re: [PyMOL] Saving setting in PyMol
Hi James, PyMOL itself does not install a .pymolrc file, but you can create your own and put it in your home directory. On startup, PyMOL will search a couple of places for the .pymolrc file (current directory, home directory, PYMOL_PATH) and take the first that is found. Hope that helps. Cheers, Thomas On Jan 26, 2013, at 7:14 AM, James Starlight jmsstarli...@gmail.com wrote: Recently I've tried to find pymolrc but couldn't do it ( I have pymol 1.5 installed from binarries package manager ) own@starlight ~/Desktop $ locate pymolrc own@starlight ~/Desktop $ locate .pymolrc own@starlight ~/Desktop $ locate *.pymolrc How I could locate it ? Akso I'm looking for detailed options of the possible settings in that file ( e.g I didnt find how to set maximum quality of images as the default option ) Thanks for help James -- Thomas Holder PyMOL Developer Schrödinger Contractor -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Saving setting in PyMol
Recently I've tried to find pymolrc but couldn't do it ( I have pymol 1.5 installed from binarries package manager ) own@starlight ~/Desktop $ locate pymolrc own@starlight ~/Desktop $ locate .pymolrc own@starlight ~/Desktop $ locate *.pymolrc How I could locate it ? Akso I'm looking for detailed options of the possible settings in that file ( e.g I didnt find how to set maximum quality of images as the default option ) Thanks for help James 2013/1/26 James Starlight jmsstarli...@gmail.com: Recently I've tried to find pymolrc but couldn't do it ( I have pymol 1.5 installed from binarries package manager ) own@starlight ~/Desktop $ locate pymolrc own@starlight ~/Desktop $ locate .pymolrc own@starlight ~/Desktop $ locate *.pymolrc How I could locate it ? Akso I'm looking for detailed options of the possible settings in that file ( e.g I didnt find how to set maximum quality of images as the default option ) Thanks for help James 2012/8/16 Folmer Fredslund folm...@gmail.com: Hi James Check out the information about how to load custom settings and functions: http://www.pymolwiki.org/index.php/Pymolrc Hope this helps, Folmer 2012/8/16 James Starlight jmsstarli...@gmail.com: Dear PyMol users! I wounder to know about possible way to save settings of the PyMol after LogOut from it. E.g I've defined some basic settings like fetch_host and fetch_patch for uploading of new pdb files as well as set new background colour. Also I've changed some advanced settings - e.g I defined to unchange atom order in the processed pdb by the below commands set retain_order,1 set pdb_retain_ids,1 After exiting from PyMol and starting of the new session I must to define this settings each time again. Is there any way to save this parameters for each new pymol session ? JAmes -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Folmer Fredslund -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Saving setting in PyMol
Dear PyMol users! I wounder to know about possible way to save settings of the PyMol after LogOut from it. E.g I've defined some basic settings like fetch_host and fetch_patch for uploading of new pdb files as well as set new background colour. Also I've changed some advanced settings - e.g I defined to unchange atom order in the processed pdb by the below commands set retain_order,1 set pdb_retain_ids,1 After exiting from PyMol and starting of the new session I must to define this settings each time again. Is there any way to save this parameters for each new pymol session ? JAmes -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Saving setting in PyMol
Hi James Check out the information about how to load custom settings and functions: http://www.pymolwiki.org/index.php/Pymolrc Hope this helps, Folmer 2012/8/16 James Starlight jmsstarli...@gmail.com: Dear PyMol users! I wounder to know about possible way to save settings of the PyMol after LogOut from it. E.g I've defined some basic settings like fetch_host and fetch_patch for uploading of new pdb files as well as set new background colour. Also I've changed some advanced settings - e.g I defined to unchange atom order in the processed pdb by the below commands set retain_order,1 set pdb_retain_ids,1 After exiting from PyMol and starting of the new session I must to define this settings each time again. Is there any way to save this parameters for each new pymol session ? JAmes -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Folmer Fredslund -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
