[PyMOL] apbs plugin for MacPyMOL?
I've installed apbs and used it from the command line. Now I'd like to run it (more conveniently) as a MacPyMOL plugin. Anybody know how I can set this up? Thanks! - Paul
Re: [PyMOL] apbs plugin for MacPyMOL?
Paul Shannon schrieb: I've installed apbs and used it from the command line. Now I'd like to run it (more conveniently) as a MacPyMOL plugin. Anybody know how I can set this up? Thanks! - Paul - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100url=/ ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users Here is all you need to know: http://pymolwiki.org/index.php/APBS signature.asc Description: OpenPGP digital signature
Re: [PyMOL] apbs plugin for macpymol
I would like to use apbs from within PyMOL. I have downloaded and installed the latest version of apbs, and apbs_tools.py exists in $PYMOL_PATH/modules/pmg_tk/startup/. However, I find no plugins entry in any of the PyMOL menus. I think that you need to rename the application bundle to PyMOLX11Hybrid in order to use plugins. Am I blind or daft? But the question I'd really like to have answered is how do I get abps to work. I would suggest 1) register APBS here http://agave.wustl.edu/apbs/download/ 2) Install fink ( http://finkproject.org/ ) and then use it to install apbs (e.g. by typing fink install apbs on the command line). hope that helps, -michael I'm using educational MacPyMOL, which integrates and extends Open-Source PyMOL 1.0r1. Thanks. Andreas - SF.Net email is sponsored by: Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users -- Biophysics Graduate Student Carlson Lab, University of Michigan http://www.umich.edu/~mlerner
Re: [PyMOL] apbs plugin for macpymol
Thanks to Michael and Warren for a quick and correct but somewhat baffling solution. In OSX, one renames an application and it starts up looking quite dissimilar from before. I'm still new to the Gospel according to Steve, and I wouldn't mind enlightenment. In any case, using MacPyMOL as PyMOLHybrid also solves the problem of physically separating the viewer from the external gui, without which one couldn't fully harness the power of multiple screens. A side note regarding Michael's instructions: APBS doesn't require fink. (I haven't even figured out what fink is yet. Some sort of yum for OSX?) One can just download the Mac OSX binary from WUSTL and install it as per default. Works like a charm, as does APBS itself. Much better than on my Fedora 7 system, I'm embarrassed to admit ;-) Andreas Michael Lerner wrote: I would like to use apbs from within PyMOL. I have downloaded and installed the latest version of apbs, and apbs_tools.py exists in $PYMOL_PATH/modules/pmg_tk/startup/. However, I find no plugins entry in any of the PyMOL menus. I think that you need to rename the application bundle to PyMOLX11Hybrid in order to use plugins. Am I blind or daft? But the question I'd really like to have answered is how do I get abps to work. I would suggest 1) register APBS here http://agave.wustl.edu/apbs/download/ 2) Install fink ( http://finkproject.org/ ) and then use it to install apbs (e.g. by typing fink install apbs on the command line). hope that helps, -michael I'm using educational MacPyMOL, which integrates and extends Open-Source PyMOL 1.0r1. Thanks. Andreas
