Hi Vincent,
can you load the 400 copies of your ligand into the same object? For example by
creating a multi-model PDB file, or using a trajectory format. In that case,
the 400 conformations will share the topology (the atoms and bonds) and you
only have to form the bond once.
Also, the
Dear everyone,
I have a MD simulation of coarse grain molecules, therefore not defined
as typically for normal protein/ligands, but as beads.
I want to represent it using Pymol, and need to define bonds between the
beads.
The problem is that I have 400 copies of my ligand, and all with the
