[PyMOL] Cartoons from ca co-ordinates only

2004-05-27 Thread maire . a . convery
Hi, I'm trying to create a movie showing mainchain and sidechain movements between two different states of a protein. I've generated the intermediate files, but they contain only the ca positions and not the other mainchain atom positions of the residues which are moving. I've specified the ss,

RE: [PyMOL] Cartoons from ca co-ordinates only

2004-05-27 Thread Warren DeLano
- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of maire.a.conv...@gsk.com Sent: Thursday, May 27, 2004 9:06 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Cartoons from ca co-ordinates only Hi, I'm trying to create a movie

[PyMOL] cartoons

2004-02-19 Thread ALEX DAJKOVIC
dear all, i am new to pymol and i have a question about cartoons. i saw the demo of cartoon ribbons and really liked it, but i haven't been able to get my protein displayed that way. when i give the command cartoon automatic all i get is a simple line that apparently traces the backbone of my

[PyMOL] cartoons

2004-02-19 Thread Scott Classen
Alex try typing: dss this will assign secondary structure to your PDB and then the cartoon will show you the sheets and helices you desire. Scott On Feb 19, 2004, at 1:44 PM, ALEX DAJKOVIC wrote: dear all, i am new to pymol and i have a question about cartoons. i saw the demo of cartoon

RE: [PyMOL] cartoons through nonstandard residues

2003-08-06 Thread Warren L. DeLano
-Original Message- From: David A. Horita [mailto:dhor...@wfubmc.edu] Sent: Wednesday, August 06, 2003 5:27 AM To: Warren L. DeLano Subject: RE: [PyMOL] cartoons through nonstandard residues Warren, Thanks for the reply, but I still don't get the cartoon running through

[PyMOL] cartoons through nonstandard residues

2003-08-05 Thread David A. Horita
Hi, When I try to draw a cartoon through the backbone of a nonstandard residue (in this case, phosphotyrosine), the cartoon strand stops prior to the PTR and starts after. How do I get a continuous strand through the phosphotyrosine backbone (or other residues, in the general case)? Ribbons

RE: [PyMOL] cartoons through nonstandard residues

2003-08-05 Thread Warren L. DeLano
: [PyMOL] cartoons through nonstandard residues Hi, When I try to draw a cartoon through the backbone of a nonstandard residue (in this case, phosphotyrosine), the cartoon strand stops prior to the PTR and starts after. How do I get a continuous strand through the phosphotyrosine backbone (or other

RE: [PyMOL] cartoons through nonstandard residues

2003-08-05 Thread Warren L. DeLano
Scientific LLC Voice (650)-346-1154 Fax   (650)-593-4020 -Original Message- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of David A. Horita Sent: Tuesday, August 05, 2003 1:53 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL