Hi,
I'm trying to create a movie showing mainchain and sidechain movements
between two different states of a protein.
I've generated the intermediate files, but they contain only the ca
positions and not the other mainchain atom positions of the residues which
are moving.
I've specified the ss,
-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
maire.a.conv...@gsk.com
Sent: Thursday, May 27, 2004 9:06 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Cartoons from ca co-ordinates only
Hi,
I'm trying to create a movie
dear all,
i am new to pymol and i have a question about cartoons.
i saw the demo of cartoon ribbons and really liked it, but i haven't
been able to get my protein displayed that way. when i give the command
cartoon automatic all i get is a simple line that apparently traces
the backbone of my
Alex
try typing:
dss
this will assign secondary structure to your PDB and then the cartoon
will show you the sheets and helices you desire.
Scott
On Feb 19, 2004, at 1:44 PM, ALEX DAJKOVIC wrote:
dear all,
i am new to pymol and i have a question about cartoons.
i saw the demo of cartoon
-Original Message-
From: David A. Horita [mailto:dhor...@wfubmc.edu]
Sent: Wednesday, August 06, 2003 5:27 AM
To: Warren L. DeLano
Subject: RE: [PyMOL] cartoons through nonstandard residues
Warren,
Thanks for the reply, but I still don't get the cartoon running
through
: [PyMOL] cartoons through nonstandard residues
Hi,
When I try to draw a cartoon through the backbone of a nonstandard
residue (in this case, phosphotyrosine), the cartoon strand stops prior
to the PTR and starts after. How do I get a continuous strand through
the phosphotyrosine backbone (or other
Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of David A.
Horita
Sent: Tuesday, August 05, 2003 1:53 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL
