Re: [PyMOL] choice of color in util.cbc
Thanks! This works well. "Spectrum chain" is more flexible and powerful in this case. Charles From: Thomas Holder Sent: Tuesday, July 14, 2020 2:24 PM To: Chen, Qiang Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] choice of color in util.cbc Hi Charles, The `first_color` argument is only active with `legacy=1`. util.cbc 6uwz, first_color=1, legacy=1 Other options for coloring by chain: spectrum chain, rainbow, 6uwz spectrum chain, blue green red yellow, 6uwz Hope that helps. Cheers, Thomas > On Jul 14, 2020, at 7:18 PM, Chen, Qiang wrote: > > Hi, Pymol Users > > Is it possible to choose different color pattern when using util.cbc? > > Wiki says I could use the following to choose the first_color > > util.cbc 6uwz, first_color=1, quiet=0 > > 6uwz is just an example of a pentameric protein. > > However, there is no change when specify any other number for first_color. It > always starts with cyan on the first chain. > > I know I can color the chain individually. I am just puzzled that util.cbc > behaves this way. > > I am using open-source pymol2.5.0a0 running on windows 10. > > Thanks! > > Charles > ___ > PyMOL-users mailing list > Archives: > https://nam05.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.mail-archive.com%2Fpymol-users%40lists.sourceforge.netdata=02%7C01%7Cqic8%40pitt.edu%7C7fa17ea9f1c74b8091a208d828232bad%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637303478808757916sdata=4LxB2rIRWc%2F46YtcoayR7%2Bg48nlegyee7IVfjGGKdnc%3Dreserved=0 > Unsubscribe: > https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fpymol%2Flists%2Fpymol-users%2Funsubscribedata=02%7C01%7Cqic8%40pitt.edu%7C7fa17ea9f1c74b8091a208d828232bad%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1%7C0%7C637303478808757916sdata=tcPJS4ItBU%2BMofo9oscHVA%2FhTOE4%2FN%2FpUD5ehSbzXIU%3Dreserved=0 -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
Re: [PyMOL] choice of color in util.cbc
Hi Charles, The `first_color` argument is only active with `legacy=1`. util.cbc 6uwz, first_color=1, legacy=1 Other options for coloring by chain: spectrum chain, rainbow, 6uwz spectrum chain, blue green red yellow, 6uwz Hope that helps. Cheers, Thomas > On Jul 14, 2020, at 7:18 PM, Chen, Qiang wrote: > > Hi, Pymol Users > > Is it possible to choose different color pattern when using util.cbc? > > Wiki says I could use the following to choose the first_color > > util.cbc 6uwz, first_color=1, quiet=0 > > 6uwz is just an example of a pentameric protein. > > However, there is no change when specify any other number for first_color. It > always starts with cyan on the first chain. > > I know I can color the chain individually. I am just puzzled that util.cbc > behaves this way. > > I am using open-source pymol2.5.0a0 running on windows 10. > > Thanks! > > Charles > ___ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] choice of color in util.cbc
Hi, Pymol Users Is it possible to choose different color pattern when using util.cbc? Wiki says I could use the following to choose the first_color util.cbc 6uwz, first_color=1, quiet=0 6uwz is just an example of a pentameric protein. However, there is no change when specify any other number for first_color. It always starts with cyan on the first chain. I know I can color the chain individually. I am just puzzled that util.cbc behaves this way. I am using open-source pymol2.5.0a0 running on windows 10. Thanks! Charles ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
