Jakob,
Try,
rotate [xAxis, yAxis, zAxis], someAngle, yourSelection
For example:
# grab a protein
fetch 1cll, async=0
# zoom & color
zoom i. 20-25
color blue, i. 20-25
# rotate some selected atoms
rotate [0.25, 0.4, 0], -12.5, i. 20-25
Cheers,
-- Jason
On Mon, Jun 28, 2010 at 11:14 AM, Jakob
thanks, how can I flip a selection of atoms around an arbitrary axis?
2010/6/28 Edward A. Berry
> Jakob Nielsen wrote:
> > Dear Pymol users,
> > I would like to modify a protein pdb file with a "crankshaft" flip,
> > which is the anti-correlated double change: psi(i-1) += delta and phi(i)
> > -=
thanks for your help, it is difficult for me to imagine the effect of this
operation, but I have read a few places that this should be the effect, but
I might be wrong. Anyway, what I want is using two consecutive C-alphas as
"flexible hinges" rotating the peptide plane between this two C-alphas
ar
Jakob Nielsen wrote:
> Dear Pymol users,
> I would like to modify a protein pdb file with a "crankshaft" flip,
> which is the anti-correlated double change: psi(i-1) += delta and phi(i)
> -= delta. Such a change should leave the protein coordinates unchanged
> effecting only atoms in residues i-1 a
Dear Jakob,
On Mon, 28 Jun 2010 15:32:59 +0200 Jakob Nielsen
wrote:
> I would like to modify a protein pdb file with a "crankshaft" flip, which
> is the anti-correlated double change: psi(i-1) += delta and phi(i) -= delta.
> Such a change should leave the protein coordinates unchanged effecting
Dear Pymol users,
I would like to modify a protein pdb file with a "crankshaft" flip, which
is the anti-correlated double change: psi(i-1) += delta and phi(i) -= delta.
Such a change should leave the protein coordinates unchanged effecting only
atoms in residues i-1 and i. However implementation i
