Re: [PyMOL] different stick_radius for different residues
Thanks a lot! I have a another question. Is there way to define a group of residues which are not linked to each other. I tried create forst2, (resi 1 and resi 32 and resi 356) but it doesn't work. Thanks, Frank --- Morri Feldman mfeld...@itsa.ucsf.edu wrote: Dear Frank, try: create forSticks1, resi 1-2 show sticks, forSticks1 set stick_radius, .25, forSticks1 create forSticks2, resi 12-15 show sticks, forSticks2 set stick_radius, .1, forSticks2 By using create, you create a new named object with its own settings database. The new object's settings can be set independently of other objects. Best, Morri On Tue, 3 Feb 2004, Dr. S. Frank Yan wrote: Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/ --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users __ Do you Yahoo!? Yahoo! Finance: Get your refund fast by filing online. http://taxes.yahoo.com/filing.html
RE: [PyMOL] different stick_radius for different residues
Frank, PyMOL's atom selection language is based on logical operators over sets of atoms. and is the intersection and or the union. You're looking for create forst2, (resi 1 or resi 32 or resi 356) Using macros, this can be reduced to: create forst, 1+32+356/ Please see the manual: http://pymol.sourceforge.net/newman/user/S0220commands.html#7 For more on atom selections. Cheers, Warren -Original Message- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Dr. S. Frank Yan Sent: Wednesday, February 04, 2004 7:47 PM To: Morri Feldman Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] different stick_radius for different residues Thanks a lot! I have a another question. Is there way to define a group of residues which are not linked to each other. I tried create forst2, (resi 1 and resi 32 and resi 356) but it doesn't work. Thanks, Frank --- Morri Feldman mfeld...@itsa.ucsf.edu wrote: Dear Frank, try: create forSticks1, resi 1-2 show sticks, forSticks1 set stick_radius, .25, forSticks1 create forSticks2, resi 12-15 show sticks, forSticks2 set stick_radius, .1, forSticks2 By using create, you create a new named object with its own settings database. The new object's settings can be set independently of other objects. Best, Morri On Tue, 3 Feb 2004, Dr. S. Frank Yan wrote: Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/ --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users __ Do you Yahoo!? Yahoo! Finance: Get your refund fast by filing online. http://taxes.yahoo.com/filing.html --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] different stick_radius for different residues
Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/
Re: [PyMOL] different stick_radius for different residues
Dear Frank, try: create forSticks1, resi 1-2 show sticks, forSticks1 set stick_radius, .25, forSticks1 create forSticks2, resi 12-15 show sticks, forSticks2 set stick_radius, .1, forSticks2 By using create, you create a new named object with its own settings database. The new object's settings can be set independently of other objects. Best, Morri On Tue, 3 Feb 2004, Dr. S. Frank Yan wrote: Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/ --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
