Re: [PyMOL] Filled rings on stick mode

2016-01-28 Thread David Hall
would something like these work for you? fetch 1rna, async=0 as cartoon set cartoon_ring_mode, 1 cartoon skip show sticks set cartoon_ladder_mode, 0 > On Jan 28, 2016, at 6:28 PM, COSTA Maria > wrote: > > Hi, > > I would like to know if it is possible to have the rings filled for the > nucle

[PyMOL] Filled rings on stick mode

2016-01-28 Thread COSTA Maria
Hi, I would like to know if it is possible to have the rings filled for the nucleobases (or nucleobases + riboses) while being simply in the mode "stick" and not in the "cartoon" mode. Many thanks for your answers, Maria, I2BC - CNRS France ---

Re: [PyMOL] filled rings

2014-06-16 Thread H. Adam Steinberg
THANK YOU, that was it! On Jun 16, 2014, at 5:22 PM, Sampson, Jared wrote: > set cartoon_ring_color, blue, my_selection H. Adam Steinberg 7904 Bowman Rd Lodi, WI 53555 608/592-2366 -- HPCC Systems Open Source Big Data

Re: [PyMOL] filled rings

2014-06-16 Thread Sampson, Jared
Hi H. Adam - Try the cartoon_ring_color setting. You can do this per-selection as well. set cartoon_ring_color, blue, my_selection Hope that helps! Cheers, Jared -- Jared Sampson Xiangpeng Kong Lab NYU Langone Medical Center http://kong.med.nyu.edu/ On Jun 16, 2014, at 4:57 PM, H. Adam

[PyMOL] filled rings

2014-06-16 Thread H. Adam Steinberg
Hi All, Somehow I have turned on or adjusted a setting and cannot figure out what it is or how to turn it off. All of the rings in my nucleic acid structures are filled (and that is okay) but they are all filled with green! They are not filled with the same color as the rest of the base. Can

Re: [PyMOL] Filled rings for cyclic molecules?

2011-11-10 Thread Thomas Holder
Hi Francis, > I'm looking for a way to get filled rings for cyclic molecules. An > example is the tetrapyrrole rings in heme. It's very similar in > representation to the nucleic acid ring mode (filled bases), but I'd > like it for an arbitrary ring . try this: set cartoon_ring_finder, 4 set car

[PyMOL] Filled rings for cyclic molecules?

2011-11-10 Thread Francis E Reyes
Hi all I'm looking for a way to get filled rings for cyclic molecules. An example is the tetrapyrrole rings in heme. It's very similar in representation to the nucleic acid ring mode (filled bases), but I'd like it for an arbitrary ring . Any approaches would be appreciated! F --