[PyMOL] how to face cartoon

2013-05-10 Thread Dhananjay
Dear all,

I am trying to animate set of proteins.
Each protein has two conformations.
I wanted to show first confirmation as cartoon, followed by fade out it and
fade in the second confirmation.

I could use movie_fade.py script successfully, however, it fades the
surface to cartoon.

I just want to fade out first confirmation and fade in and display the
second one.

Any suggestion please.

Thanking you in advance.

-- DJ
--
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Re: [PyMOL] how to face cartoon

2013-05-10 Thread Jason Vertrees
Hi DJ,

It sounds like you're using the transparency setting instead of
cartoon_transparency. For example instead of

movie_fade transparency,  1, 0., 40, 1.

you likely want

movie_fade cartoon_transparency,  1, 0., 40, 1.

Cheers,

-- Jason


On Fri, May 10, 2013 at 3:50 AM, Dhananjay dhananjay.c.jo...@gmail.com wrote:
 Dear all,

 I am trying to animate set of proteins.
 Each protein has two conformations.
 I wanted to show first confirmation as cartoon, followed by fade out it and
 fade in the second confirmation.

 I could use movie_fade.py script successfully, however, it fades the surface
 to cartoon.

 I just want to fade out first confirmation and fade in and display the
 second one.

 Any suggestion please.

 Thanking you in advance.

 -- DJ



 --
 Learn Graph Databases - Download FREE O'Reilly Book
 Graph Databases is the definitive new guide to graph databases and
 their applications. This 200-page book is written by three acclaimed
 leaders in the field. The early access version is available now.
 Download your free book today! http://p.sf.net/sfu/neotech_d2d_may
 ___
 PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
 Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
 Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net



-- 
Jason Vertrees, PhD
Director of Core Modeling Products
Schrödinger, Inc.

(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120

--
Learn Graph Databases - Download FREE O'Reilly Book
Graph Databases is the definitive new guide to graph databases and 
their applications. This 200-page book is written by three acclaimed 
leaders in the field. The early access version is available now. 
Download your free book today! http://p.sf.net/sfu/neotech_d2d_may
___
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