[PyMOL] how to setup environment for APBS?

[Albert]

Hello:

I noticed that each time when I try to use APBS plugin, pymol always ask 
to specify the location of:

apbs
psize.py
pdb2pqr.py

I am just wondering can we somehow write the location of those program 
into .pymolrc file so that each time Pymol APBS plugin can find it 
automatically?

thanks a lot

Albert

--
___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

Re: [PyMOL] how to setup environment for APBS?

[Osvaldo Martin]

Hi Albert,

As far as I know you can set the environmental variables APBS_BINARY_DIR,
APBS_PSIZE_DIR and  APBS_PDB2PQR_DIR or just set the values for this
variable inside the plugin.

Anyone knows any other method?

Cheers,
Osvaldo


On Thu, Oct 8, 2015 at 4:54 PM, Albert  wrote:

> Hello:
>
> I noticed that each time when I try to use APBS plugin, pymol always ask
> to specify the location of:
>
> apbs
> psize.py
> pdb2pqr.py
>
> I am just wondering can we somehow write the location of those program
> into .pymolrc file so that each time Pymol APBS plugin can find it
> automatically?
>
> thanks a lot
>
> Albert
>
>
> --
> ___
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
--
___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net