Re: CCL:[MMTK] [PyMOL] improving interoperability between python molecule toolkits (fwd)

2002-12-19 Thread Peter Murray-Rust
At 10:41 13/12/2002 +0100, Konrad Hinsen wrote: Gustavo Mercier gamerc...@yahoo.com writes: As a suggestion, let's consider the chemistry implementation of XML -- CML. Whatever the details of the object molecule, it would be beneficial to input and output to/from CML. A specification of

Re: [Pyquante-users] Re: [MMTK] [PyMOL] improving interoperability between python molecule toolkits (fwd)

2002-12-13 Thread Richard Muller
On Friday, December 13, 2002, at 01:41 AM, Konrad Hinsen wrote: As a suggestion, let's consider the chemistry implementation of XML -- CML. Whatever the details of the object molecule, it would be beneficial to input and output to/from CML. A specification of I don't agree. I looked at CML

Re: [PyMOL] improving interoperability between python molecule toolkits

2002-12-12 Thread Michael Banck
On Thu, Dec 12, 2002 at 10:33:47AM +, Jules Jacobsen wrote: I completely agree here, an integrated total platform would be immensely useful. I think that the problem is not necessarily all that far from a solution- currently there is a collaborative computing project for NMR (CCPN)

Re: [PyMOL] improving interoperability between python molecule toolkits

2002-12-12 Thread Michael Banck
Hi again, Ok, so the license is available at http://www.bio.cam.ac.uk/nmr/ccp/project/about_ccpn/licensing/licensing.html Unfortunately, this looks quite incompatible to the GPL: (2) Conditions for DISTRIBUTION of SOFTWARE to MEMBERS (2.1) An individual or ORGANISATION must be a MEMBER of

Re: [MMTK] [PyMOL] improving interoperability between python molecule toolkits (fwd)

2002-12-12 Thread Konrad Hinsen
Eugen Leitl eu...@leitl.org writes: It seems to be in everyone's interest to allow easy interoperation between the toolkits. However, in my experience it is a frustrating and difficult task, even for relatively simple tasks. True. I believe that a common set of core modules is required.

[PyMOL] improving interoperability between python molecule toolkits

2002-12-11 Thread Michael Sorich
Hello all, I share in Warren's vision of extending PyMol into a complete platform for crystallography, computational chemistry, modeling, and informatics. However, I believe this can only come about by cooperation and integration with other python based molecule toolkits. MMTK has code which may