Re: [PyMOL] optimize and open babel troubles

2016-01-07 Thread Joe Gauthier
This worked, thanks!

On Thu, Jan 7, 2016 at 6:20 AM, Osvaldo Martin 
wrote:

> Hi Joe,
>
> If you are using Windows 64 bits you should install the 64 bits version of
> openbabel .
>
> If you are using Ubuntu/Linux you can install PyMOL and openbabel with the
> following command.
>
> sudo apt-get install pymol openbabel python-openbabel
>
> Cheers,
> Osvaldo.
>
> On Wed, Jan 6, 2016 at 8:52 PM, David Hall  wrote:
>
> Ubuntu’s universe repository has a 32-bit version of pymol?
>>
>> http://packages.ubuntu.com/precise/pymol
>>
>> Obviously, being a 4-year old distro, it is an older release, but it may
>> still work with the plugin.
>>
>> -David
>>
>> On Jan 6, 2016, at 2:39 PM, Joe Gauthier  wrote:
>>
>> Hello all,
>>
>> I am trying to utilize the optimize plugin within pymol. I have installed
>> open babel per their instructions on their website. All of the "test to see
>> if it is working" tests seem to work (eg,using import openbabel in the cmd
>> window).
>>
>> For what it is worth, I am running 64 bit windows, but am using the 32
>> bit windows pymol since there doesn't seem to be a 64 bit version of open
>> babel for windows.
>>
>> When I load pymol, I still get the following:
>> "Optimize plug-in needs openbabel to be installed in your system, please
>> follow the instructions at
>> http://openbabel.org/wiki/Get_Open_Babel;
>>
>> Several other plugins also fail to load properly, due to the inability to
>> import scimath.
>>
>> I have also tried this on ubuntu 12.04, but that is a 32 bit operating
>> system and it seems there is no 32 bit linux version of pymol readily
>> available.
>>
>> Thanks for your time,
>> Joe
>>
>> --
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>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
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>>
>>
>>
>>
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>>
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> ​
>
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[PyMOL] optimize and open babel troubles

2016-01-06 Thread Joe Gauthier
Hello all,

I am trying to utilize the optimize plugin within pymol. I have installed
open babel per their instructions on their website. All of the "test to see
if it is working" tests seem to work (eg,using import openbabel in the cmd
window).

For what it is worth, I am running 64 bit windows, but am using the 32 bit
windows pymol since there doesn't seem to be a 64 bit version of open babel
for windows.

When I load pymol, I still get the following:
"Optimize plug-in needs openbabel to be installed in your system, please
follow the instructions at
http://openbabel.org/wiki/Get_Open_Babel;

Several other plugins also fail to load properly, due to the inability to
import scimath.

I have also tried this on ubuntu 12.04, but that is a 32 bit operating
system and it seems there is no 32 bit linux version of pymol readily
available.

Thanks for your time,
Joe
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Re: [PyMOL] optimize and open babel troubles

2016-01-06 Thread David Hall
Ubuntu’s universe repository has a 32-bit version of pymol?

http://packages.ubuntu.com/precise/pymol

Obviously, being a 4-year old distro, it is an older release, but it may still 
work with the plugin.

-David

> On Jan 6, 2016, at 2:39 PM, Joe Gauthier  wrote:
> 
> Hello all,
> 
> I am trying to utilize the optimize plugin within pymol. I have installed 
> open babel per their instructions on their website. All of the "test to see 
> if it is working" tests seem to work (eg,using import openbabel in the cmd 
> window).
> 
> For what it is worth, I am running 64 bit windows, but am using the 32 bit 
> windows pymol since there doesn't seem to be a 64 bit version of open babel 
> for windows.
> 
> When I load pymol, I still get the following:
> "Optimize plug-in needs openbabel to be installed in your system, please 
> follow the instructions at
> http://openbabel.org/wiki/Get_Open_Babel 
> "
> 
> Several other plugins also fail to load properly, due to the inability to 
> import scimath.
> 
> I have also tried this on ubuntu 12.04, but that is a 32 bit operating system 
> and it seems there is no 32 bit linux version of pymol readily available.
> 
> Thanks for your time,
> Joe
> --
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> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

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