Re: [PyMOL] possible bug mouse coordinates
Hi Arnaud, This should be fixed now, see https://github.com/schrodinger/pymol-open-source/commit/af28e453c6 Cheers, Thomas > On Jun 13, 2019, at 5:46 PM, Thomas Holder > wrote: > > Hi Arnaud, > > I can reproduce both issues, at least with "sticks" representation. > Apparently PyMOL is missing pick color invalidation somewhere. > > As a workaround, click the "Rebuild" button (upper right button box), or type > the "rebuild" command. After that, picking should be correct again. > > Cheers, > Thomas > >> On Jun 13, 2019, at 4:21 PM, Arnaud Basle wrote: >> >> Dear All, >> >> We found that our home compiled version has the problem just even doing: >> >> load a pdb >> >> change the colour >> >> and then the mouse coordinates are wrong... Anyone else? >> >> Cheers, >> >> Arnaud >> >> >> On 13/06/2019 14:33, Arnaud Basle wrote: >>> Dear All, >>> >>> We may have found a bug where pymol does not get the correct mouse location >>> on the screen. >>> >>> We are using Version 2.3.0a0 on linux Mint 19 (~ubuntu). >>> >>> Maybe people can try to reproduce the bug: >>> >>> open a pdb file >>> >>> display sticks >>> >>> try to select residues or recenter and it should work fine. >>> >>> Now, reduce the top part window of pymol with the log output, movie buttons >>> and command line (the mouse pointer will change then click and drag). >>> >>> repeat selecting/centering and it should work. >>> >>> Then use a menu entry, for example Display>Background>White >>> >>> And if not only us now it seems we click on a residue but another one is >>> selected. It looks like there is a bug where pymol cannot determine the >>> correct mouse co-ordinates? >>> >>> Cheers, >>> >>> Arnaud >>> >>> >> -- >> Dr Arnaud Basle X-ray facilities manager >> Newcastle Structural Biology Laboratory >> University of Newcastle >> Medical School >> ICAMB >> Framlington place >> NE2 4HH Newcastle upon tyne >> Phone 0191 208 8931 >> >> >> >> ___ >> PyMOL-users mailing list >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> Unsubscribe: >> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. > -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
Re: [PyMOL] possible bug mouse coordinates
Hi Arnaud, I can reproduce both issues, at least with "sticks" representation. Apparently PyMOL is missing pick color invalidation somewhere. As a workaround, click the "Rebuild" button (upper right button box), or type the "rebuild" command. After that, picking should be correct again. Cheers, Thomas > On Jun 13, 2019, at 4:21 PM, Arnaud Basle wrote: > > Dear All, > > We found that our home compiled version has the problem just even doing: > > load a pdb > > change the colour > > and then the mouse coordinates are wrong... Anyone else? > > Cheers, > > Arnaud > > > On 13/06/2019 14:33, Arnaud Basle wrote: >> Dear All, >> >> We may have found a bug where pymol does not get the correct mouse location >> on the screen. >> >> We are using Version 2.3.0a0 on linux Mint 19 (~ubuntu). >> >> Maybe people can try to reproduce the bug: >> >> open a pdb file >> >> display sticks >> >> try to select residues or recenter and it should work fine. >> >> Now, reduce the top part window of pymol with the log output, movie buttons >> and command line (the mouse pointer will change then click and drag). >> >> repeat selecting/centering and it should work. >> >> Then use a menu entry, for example Display>Background>White >> >> And if not only us now it seems we click on a residue but another one is >> selected. It looks like there is a bug where pymol cannot determine the >> correct mouse co-ordinates? >> >> Cheers, >> >> Arnaud >> >> > -- > Dr Arnaud Basle X-ray facilities manager > Newcastle Structural Biology Laboratory > University of Newcastle > Medical School > ICAMB > Framlington place > NE2 4HH Newcastle upon tyne > Phone 0191 208 8931 > > > > ___ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
Re: [PyMOL] possible bug mouse coordinates
Dear All, We found that our home compiled version has the problem just even doing: load a pdb change the colour and then the mouse coordinates are wrong... Anyone else? Cheers, Arnaud On 13/06/2019 14:33, Arnaud Basle wrote: Dear All, We may have found a bug where pymol does not get the correct mouse location on the screen. We are using Version 2.3.0a0 on linux Mint 19 (~ubuntu). Maybe people can try to reproduce the bug: open a pdb file display sticks try to select residues or recenter and it should work fine. Now, reduce the top part window of pymol with the log output, movie buttons and command line (the mouse pointer will change then click and drag). repeat selecting/centering and it should work. Then use a menu entry, for example Display>Background>White And if not only us now it seems we click on a residue but another one is selected. It looks like there is a bug where pymol cannot determine the correct mouse co-ordinates? Cheers, Arnaud -- Dr Arnaud Basle X-ray facilities manager Newcastle Structural Biology Laboratory University of Newcastle Medical School ICAMB Framlington place NE2 4HH Newcastle upon tyne Phone 0191 208 8931 ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] possible bug mouse coordinates
Dear All, We may have found a bug where pymol does not get the correct mouse location on the screen. We are using Version 2.3.0a0 on linux Mint 19 (~ubuntu). Maybe people can try to reproduce the bug: open a pdb file display sticks try to select residues or recenter and it should work fine. Now, reduce the top part window of pymol with the log output, movie buttons and command line (the mouse pointer will change then click and drag). repeat selecting/centering and it should work. Then use a menu entry, for example Display>Background>White And if not only us now it seems we click on a residue but another one is selected. It looks like there is a bug where pymol cannot determine the correct mouse co-ordinates? Cheers, Arnaud -- Dr Arnaud Basle X-ray facilities manager Newcastle Structural Biology Laboratory University of Newcastle Medical School ICAMB Framlington place NE2 4HH Newcastle upon tyne Phone 0191 208 8931 ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
