Dear:
I've compiled pymol-1.8.0 under my Linux X64 OS. I found that Pymol can
start by command:
pymol
without any complaints or erros. However, when I try to load a .pdb file
into pymol, pymol always failed with following messages:
-----------------------------------------------------------------------------------------------
stephen@linux:~/tmp> pymol 4eiy.pdb
PyMOL(TM) Molecular Graphics System, Version 1.8.0.0.
Copyright (c) Schrodinger, LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
PyMOL is user-supported open-source software. Although some versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing efforts to create open and affordable
scientific
software by purchasing a PyMOL Maintenance and/or Support subscription.
More information can be found at "http://www.pymol.org";.
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
Detected OpenGL version 2.0 or greater. Shaders available.
Detected GLSL version 1.30.
OpenGL graphics engine:
GL_VENDOR: VMware, Inc.
GL_RENDERER: Gallium 0.4 on llvmpipe (LLVM 3.4, 256 bits)
GL_VERSION: 2.1 Mesa 10.0.3
Detected 4 CPU cores. Enabled multithreaded rendering.
HEADER MEMBRANE PROTEIN 06-APR-12 4EIY
TITLE CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF A2AAR-BRIL IN COMPLEX
TITLE 2 WITH ZM241385 AT 1.8A RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A/SOLUBLE CYTOCHROME B562 CHIMERA;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CYTOCHROME B-562;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
CmdLoad: "4eiy.pdb" loaded as "4eiy".
/home/stephen/install/pymol-1.8.0/pymol: line 3: 10490 Segmentation
fault "/usr/bin/python"
"/home/stephen/install/pymol-1.8.0/modules/pymol/__init__.py" "$@"
-----------------------------------------------------------------------------
I am just wondering what's the problem? I also tried .cif, .mol2 files,
and all of them failed.
thx a lot
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