[PyMOL] rmsd sicechains super

2013-11-28 Thread Osvaldo Martin
Hi, I am trying to use the comand cmd.super() to calculate the rmsd between the sidechains of two proteins using cmd.super('%s and not name ca+c+o+n' % obj0, '%s and not name ca+c+o+n' % obj1) And I get this error ExecutiveAlign: invalid selections for alignment. It seems to me that the

Re: [PyMOL] rmsd sicechains super

2013-11-28 Thread Tsjerk Wassenaar
Hi Osvaldo, The problem can be understood from the description of 'super'. #- PyMOLhelp super DESCRIPTION NOTE: This feature is experimental and unsupported. super performs a residue-based pairwise alignment followed by a structural superposition,

Re: [PyMOL] rmsd sicechains super

2013-11-28 Thread Osvaldo Martin
Thanks for the clarification. Osvaldo. On Thu, Nov 28, 2013 at 2:11 PM, Tsjerk Wassenaar tsje...@gmail.com wrote: Hi Osvaldo, The problem can be understood from the description of 'super'. #- PyMOLhelp super DESCRIPTION NOTE: This feature is experimental