Re: [PyMOL] sequence file extraction

2012-07-24 Thread Robert Campbell
Hi Thomas, On Tue, 2012-07-24 12:57 EDT, Thomas Holder wrote: > Hi Stefano, > > this is a known bug and it has not been fixed yet. A workaround is to > only save one object at a time to fasta format. > > See bug report: > http://sourceforge.net/tracker/?func=detail&aid=3466472&group_id=4546

Re: [PyMOL] sequence file extraction

2012-07-24 Thread Jason Vertrees
Hi Vaheh, Thanks for pointing this out. I just fixed this, am testing, and will push the changes shortly. Cheers, -- Jason On Tue, Dec 27, 2011 at 11:15 AM, Oganesyan, Vaheh wrote: > I'm using ver. 1.4.1 and it looks like PyMOL recently lost the ability to > extract the sequence info. > I'm

Re: [PyMOL] sequence file extraction

2012-07-24 Thread Thomas Holder
fasta file is being written. >> >>Vaheh >> >> >> -Original Message- >> From: Oganesyan, Vaheh [mailto:oganesy...@medimmune.com] >> Sent: Tuesday, December 27, 2011 11:16 AM >> To: pymol-users@lists.sourceforge.net >> Subject: [PyMOL] se

Re: [PyMOL] sequence file extraction

2012-07-24 Thread Stefano Marzi
t; -Original Message- > From: Oganesyan, Vaheh [mailto:oganesy...@medimmune.com] > Sent: Tuesday, December 27, 2011 11:16 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] sequence file extraction > > I'm using ver. 1.4.1 and it looks like PyMOL recently l

Re: [PyMOL] sequence file extraction

2011-12-27 Thread Oganesyan, Vaheh
Never mind. After restarting the computer fasta file is being written. Vaheh -Original Message- From: Oganesyan, Vaheh [mailto:oganesy...@medimmune.com] Sent: Tuesday, December 27, 2011 11:16 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] sequence file extraction I&#

[PyMOL] sequence file extraction

2011-12-27 Thread Oganesyan, Vaheh
I'm using ver. 1.4.1 and it looks like PyMOL recently lost the ability to extract the sequence info. I'm typing "save objectname.fasta" in old version and get the fasta file. In 1.4.1 it complains = Traceback (most recent call last): File "C:\Program Files\PyMOL\PyMOL/mo