Hi Mark,
You can also directly change the vdw radius of sodium to its ionic radius:
alter r. na\+,vdw=1.02
rebuild
Cheers,
Tsjerk
On Nov 27, 2007 1:15 AM, Dr. Mark Mayer wrote:
> hello,
>
> Can't find anything about this in docs or in settings:
>
> Where are sphere diameter settings controll
>
> -Original Message-
> From: Abhinav Verma [mailto:abhinav1...@gmail.com]
> Sent: Mon 11/26/2007 7:35 PM
> To: Mayer, Mark (NIH/NICHD) [E]
> Cc: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] sphere diameter
>
> set sphere_scale should scale the sph
set sphere_scale should scale the spheres, but they should be
proportionate and they are van der waal spheres I guess, so chlorine
is smaller than soduim..
http://pt.chemicalstore.com/
227 vs 175 pm for na and cl respecively.
On Nov 26, 2007 4:15 PM, Dr. Mark Mayer wrote:
> hello,
>
> Can't fin
hello,
Can't find anything about this in docs or in settings:
Where are sphere diameter settings controlled for individual atomic
species: I'm trying to make fig with ions and the sizes don't seem
to be right - Cl too small and Na too big.
Thanks
--
Mark Mayer Ph.D.
LCMN NICHD NIH DHHS
Bld
