[PyMOL] transpaerncy between different objects

2009-06-12 Thread hodak
Hello, I am working with two copies of a molecule (moved relative to each other), each being a separate object. Cartoons in both are set to be transparent (cartoon_transparency=0.5), but after ray tracing there is no transparency (or shadows) between objects (first objects completely obscures

Re: [PyMOL] transpaerncy between different objects

2009-06-12 Thread Tsjerk Wassenaar
Hi Miro, This one's in the archive, but it was also in my gmail archive, which made it easy to dig up. The setting you need is transparency_mode: set transparency_mode,1 This should give you the behaviour you expect for multiple transparent surfaces. In addition, you may want to have a look at