Re: [PyMOL] visualize mode

2015-06-19 Thread Command Line
Hi, that works for me. Albeit I would be more happy if there would be an option directly inside pymol. Anyway, thanks. 2015-06-18 16:30 GMT-05:00 Osvaldo Martin aloctavo...@gmail.com: Hi, Do you want to do something similar to porcupine plots? If so, check the porcupine function in this

Re: [PyMOL] visualize mode

2015-06-19 Thread Emilio Xavier Esposito
Hi What about Modevectors? http://www.pymolwiki.org/index.php/Modevectors Emilio On Fri, Jun 19, 2015 at 10:23 AM, Command Line g4commandl...@gmail.com wrote: Hi, that works for me. Albeit I would be more happy if there would be an option directly inside pymol. Anyway, thanks. 2015-06-18

[PyMOL] visualize mode

2015-06-18 Thread Command Line
Hi all, when visualizing motion or modes (like NMA), is it possible to show the velocities as small arrows on all the moving atoms? B-values are not an option, since I want to see the 3D motion of the atoms. Thanks --

Re: [PyMOL] visualize mode

2015-06-18 Thread Osvaldo Martin
Hi, Do you want to do something similar to porcupine plots? If so, check the porcupine function in this Ipython notebook https://github.com/aloctavodia/SBioA/blob/master/English/04_Comparing_structures.ipynb . Cheers, Osvaldo. On Thu, Jun 18, 2015 at 5:07 PM, Command Line