alter eys/,type='ATOM' sort The problem is that, by default, PyMOL doesn't create ribbons for HETATMs (typically ligands and solvent). With the above command, you're converting selenocysteine residues into regular atoms and sorting them into place so that they can be included in the ribbon.
Cheers, Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D. Informatics Manager Sunesis Pharmaceuticals, Inc. 341 Oyster Point Blvd. S. San Francisco, CA 94080 (650)-266-3606 FAX:(650)-266-3501 > -----Original Message----- > From: joer...@altavista.fr [mailto:joer...@altavista.fr] > Sent: Tuesday, August 06, 2002 7:43 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Problem with Seleno-Cysteine > > > Hi everybody > > I have the structure of a Molybdo-CODH (CO-Dehydrogenase), > which contains a > Seleno-Cysteine as Ligand for the active site cluster (see 1QJ2.pdb) > The residue b/388 is denoted as EYS in the pdb file. > In the cartoon representation, pymol does not display this > part of the backbone > (I get a "hole" in the cartoon structure). > I can display this residue using "show sticks, resi 388", and > I can pick every > single atom, even the selenium. > Any idea how I can display the backbone without break? > > Thanks > joerg > > Internet et mail gratuit AltaVista http://www.altavista.fr > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
