RE: [PyMOL] Restrict surface transparency to limited region

2004-01-18 Thread Boris Brumshtein
Dear Roger, I probably have a very simple solution for you. First create two objects of your protein with a distinct names. Then show a non-transparent surface for one of the objects. Hide the surface for the residues you'd like to see under the transparent surface with a comand: "hide surf

RE: [PyMOL] Restrict surface transparency to limited region

2004-01-15 Thread Warren L. DeLano
t; Sent: Thursday, January 15, 2004 4:29 AM > To: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Restrict surface transparency to limited region > > > Hi Warren, > > Wouldn't it be possible to change the [r,g,b] representation in Pymol to > [r,g,b,t]. Then it woul

Re: [PyMOL] Restrict surface transparency to limited region

2004-01-15 Thread Tsjerk Wassenaar
Hi Warren, Wouldn't it be possible to change the [r,g,b] representation in Pymol to [r,g,b,t]. Then it would be trivial to have gradual transparencies in surfaces or other things. Since transparency is supported... Cheers, Tsjerk Warren L. DeLano wrote: Roger, This isn't possible

RE: [PyMOL] Restrict surface transparency to limited region

2004-01-14 Thread Warren L. DeLano
Roger, This isn’t possible right now. The only way to do it is to create two objects, surfacing different atoms in each object, and then enabling transparency in just one of the two objects. Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scient