Hi,
you may try to use caver:
http://viper.chemi.muni.cz/caver/concept.php
or castp
http://cast.engr.uic.edu/cast/oldindex.php
regards
andrea
2006/1/21, Paul Wilhelm Elsinghorst p...@uni-bonn.de:
Hi,
a little question regarding cavity surfaces :-)
I have a set of active atoms (GOLD
Hi Paul,
I have a set of active atoms (GOLD output) that surround a cavity. Now I
want to dipslay the surface only for the cavity wall, not on the
outside.
try this: show surface for the whole protein and then hide surface for
not the active residues - something like this:
from pymol
Paul,
PyMOL generally shows all sides of an exposed atom, but perhaps you
could load both the GOLD output and the original structure.
You could then only show the surface on the atoms in the original
structure with corresponding atoms in the gold output as follows:
load orig.pdb
load gold.pdb
