Jason,
It was 0.99. I have re-checked using 1.2 and everything is displayed correctly.
Sorry about that.
Vitaly
- Original Message -
From: Jason Vertrees
Date: Thursday, September 9, 2010 8:57 am
Subject: Re: [PyMOL] CA trace
Cc: pymol-users@lists.sourceforge.net
> Vitaly,
>
Vitaly,
I just ran your example and I get two separate chains. What version
of PyMOL are you using?
Cheers,
-- Jason
On Thu, Sep 9, 2010 at 12:16 AM, Vitaly Vostrikov wrote:
> Hello,
>
> I would like to show a CA trace for each of the chains in a dimer. The
> "cartoon_trace" option works fin
Thank you Warren,
That exactly is what I wanted.
___
Vaheh
From: Warren DeLano [mailto:war...@delsci.com]
Sent: Wednesday, March 04, 2009 8:45 PM
To: Oganesyan, Vaheh; pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] Ca trace
Vaheh
Vaheh,
PyMOL cannot draw a decent cartoon from CA-coordinates only.
set cartoon_trace_atoms
cartoon tube
show cartoon, name ca
Is about the best it can do.
Cheers,
Warren
From: Oganesyan, Vaheh [mailto:oganesy...@medimmune.com]
S
Jason,
In version 0.90, there is a ribbon_trace setting which allows
you to do this for the ribbon representation. In versions 0.91+, I've
added the same thing for cartoons "cartoon_trace".
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
But that's what you should get, since alpha carbons aren't bonded
directly to other alpha carbons, right? Perhaps what you really want
to do is draw the protein "backbone only"? Try this:
hide all
show (name ca,c,n,o)
Cheers,
Ben
"Frank Vondelft" writes:
> Hidy Pymollers
>
> I *think*
A UCSF MidasPlus style CA trace can be obtained with:
set ribbon_sampling=1
show ribbon
A space filling version can be had with:
set cartoon_smooth_loops=0
set cartoon_sampling=1
cartoon loop
show cartoon
All of the above can be restricted so as to apply to only a single
object as described in
