Sabuj Pattanayek wrote:
Hi,
I was trying to find information online/and in the archives of the
mailing list to do what you are asking. You can try help fit which
will give you some more commands to try. You can also try help
pair_fit. Unfortunately I know I'm doing something wrong so I
Yunbo,
Can I use pymol to superimpose two protein structures ? How
should I do?
You want the align command.
Example usage with 2 pdb files:
load prot1.pdb
load prot2.pdb
align prot1ca, prot2ca
It may be necessary to restrict the alignment region to certain chains. For
example,
Hi,
I was trying to find information online/and in the archives of the
mailing list to do what you are asking. You can try help fit which
will give you some more commands to try. You can also try help
pair_fit. Unfortunately I know I'm doing something wrong so I can't get
these commands to work
