[PyMOL] writing out coordinates

Hey Warren, I've done a structural alignment of 2 domains using your align command. How do I write out the new coordinates? Craig

[PyMOL] two_sided_lighting

Hello everybody, For two_sided_lighting, is there a way to change the relative brightness of the two lights? Thanks, Meitian Wang

RE: [PyMOL] two_sided_lighting

Meitian, Sorry, this is not possible. Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 -Original Message- From: pymol-users-ad...@lists.sourceforge.net

Re: [PyMOL] HELP Load biological unit

Dear All, Help, I don't know what I am doing wrong. I want to load a dimer into pymol, 3GRS, the standard PDF file from the PDB bank only gives co-ordinates for a monomer but if I download the PDB file for the biological unit

[PyMOL] RE:

One quick question... how do I tell PyMOL to draw a cylinder (or bond) of a given radius between two positions X,Y,Z and X', Y',Z'? (From Python...) from pymol.cgo import * from pymol import cmd obj = [] obj.extend( [ CUSTOM_CYLINDER, 1.0, 2.0, 3.0, # XYZ 1 4.0, 5.0, 6.0, # XYZ 2