RE: [PyMOL] drawing hydrogen bonds or dashes

2004-02-20 Thread John Berrisford
Thanks that works fine apart from one thing: I wish to display lines between 97AOE1 and MN in two overlapped structures, with identical chain identification, in two different colours. Using the below command draws two lines in the same colour. Is there a way a specifying a line between the two

[PyMOL] Cartoon Transparency AND Transparent Mesh

2004-02-20 Thread Paul Wan
Hi Just got my hands on Pymol G5 version and having loadsa fun with it. I'm trying to make a diagram and wondered if it is possible to make the cartoon transparent then put a mesh over the whole thing (also made transparent). Currently I can make th ecartoon transparent but as soon as I add a

RE: [PyMOL] drawing hydrogen bonds or dashes

2004-02-20 Thread Warren DeLano
John, It is simply a matter of restricting your atom selections to lie within that single object: dist my_line, e4_final//A/97/OE1, e4_final//M/200/MN hide labels See http://pymol.sourceforge.net/newman/user/S0220commands.html#7 for more information on atom selections. Cheers, Warren