[PyMOL] 3D alignment viewer of RAPTOR ?

2004-04-19 Thread Joyce Ma
Hi, I just downloaded PROView and am trying to play around with it. After selecting multiple sequence alignment/structure superposition, there are a clutter of structures in the structure window that makes it hard to tell which structure corresponds to which alignment. Is there a way to reduce

[PyMOL] pymol locks up - unix pipe

2004-04-19 Thread Douglas Kojetin
Hi All- I'm using PyMOL through a UNIX pipe within a Tcl/Tk script interface. The script make calls to highlight certain residues, and it also uses the 'dist' command. After the script makes a a few calls (20) to PyMOL, my PyMOL session usually locks up. Anyone know what might be going

RE: [PyMOL] 3D alignment viewer of RAPTOR ?

2004-04-19 Thread Warren DeLano
Joyce ( friends), I think that these kinds of RAPTOR-specific questions are best followed up with Bioinformatics Solutions ( http://www.bioinformaticssolutions.com ) first, rather than being posted to PyMOL-users. We're not (yet) familiar with how their interface works, so it is hard for

[PyMOL] map_double v0.95?

2004-04-19 Thread Mark Wilke
Is the command map_double no longer supported in ver0.95? Is there a replacement command? How do I generate a similar effect? - Mark