[PyMOL] Re: CrystalEyes on a Mac (Wataru Kagawa)

2004-10-05 Thread Wataru Kagawa
Hi I have CrystalEyes setup on my G5 dual with a Sony Multiscan G520 CRT monitor. The PyMOL Stereo of version 0.93 worked fine on my computer few months ago until today I noticed that it no longer works. Executing it turns the screen black for few seconds and then gives the 'unexpectedly qu

Re: [PyMOL] Re: CrystalEyes on a Mac (Wataru Kagawa)

2004-10-05 Thread Daniel Moriarty
Walter,

[PyMOL] Questions about ray-tracing

2004-10-05 Thread Zach
Hello to all, I am trying to ray trace a picture using pymol and I have a couple of questions: a) I am using a cylindrical helix representation. Some of these helices have side chains sticking out of them represented as sticks. The connection between the alpha carbon (within the helix) and the b

RE: [PyMOL] Questions about ray-tracing

2004-10-05 Thread Warren DeLano
Zach, Unfortunately, there is currently no good solution to problem (a). PyMOL doesn't yet support automatic repositioning of CA coordinates to reflect the cartoon representation. Regarding (b), the PyMOL light source is directional, not positional. The direction is controlled using the light