Hi Gabriel,
You can set a specific color either for the surface or the cartoon with
set surface_color, color
set cartoon_color, color
or if you want to have more control over the colors you can create a new
object and show one in cartoon and the other in surface:
create newobj, obj
show
Hi,
I have a problem with apbs in pymol. I got it to work fine, if I cutted a
100 aminoacid stretch from my molecule and followed the instructions.
However my protein is a bit bigger, ~800aa, and I cannot get the apbs map
to cover my molecule. I get the whole surface, but only half of it is
Hi PyMolers
Is it possible to make some basic molecular mechanics calculations in
PyMOL, in fact I would like to measure the binding energy between a
protein and various ligands?
Thanks in advance
Gabriel
Gabriel PAËS
PhD Student
The Danish University of Pharmaceutical Sciences
Hi!
We are working on a project creating an OpenSource-library for a Virtual
Reality gloves/positioning device-combination that is going to be
integrated with a data analysis tool. However, the program is not in a
state where we can integrate our work yet, so we will create a prototype
to
Hi again,
1st of all thanks to Kristian -- the time.sleep(1) hint works fine. Maybe you
can help me with this one also:
calling a pdb file via
pdb CODE
usually checks if the file has already been downloaded and if yes, takes it from
the local repository.
however, calling this command from a
Hello,
I loaded an Xplor map and created a mesh:
load grid.xplor, map1
isomesh mesh1, map1, 30
Now I need to translate the mesh by 1.0A in all three directions
(x,y,z). In other words, I need to shift the mesh object by some offset
vector. Is there any way to do that in pymol? It seems like
HI everyone
I'm pretty new to pymol and I'm trying to show an electrostatic surface. I have
managed to use the apbs plugin to do this - however I REALLY want to be able to
do this from a .pml script since this would make it easier to do some movies.
Anyone have any ideas how to do this?
Thanks
