Re: [PyMOL] Name length in names panel

Hello Sebastien, Hello, Is there a way to expand the names panel to be able to read object and selection names larger than 16 characters ? At the bottom left corner of the panel, just to the left of the VCR controls is a little vertical bar. You can drag it to change the width of the

[PyMOL] unit cell and cell packing

Hi everyone, I was wondering if there's a simple way to display the unit cell in Pymol? it will be even better if anybody know how to show the cell packing. Thanks for you help! Cheers, zhenbo

Re: [PyMOL] unit cell and cell packing

Hi Zhenbo, If you mean the triclinic unit cell, you can show it with 'show cell', given that it's provided in the pdb file. If you want a different representation, you need a script. Also for the cell packing, you'd need a script. If it's just a translation lattice, I think I have what you need,

Re: [PyMOL] comments ?

On Monday 01 August 2005 11:08, Sebastien Moretti wrote: Hello, I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, !-- or -- characters but everything fails. ... How can I use comments in PyMOL scripts ? The hash character (#) works to include comments

Re: [PyMOL] comments ?

I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, !-- or -- characters but everything fails. use '#' but on a line of its own not at the end of line containing a pymol command, like this: # color 1DHS in red color red, 1DHS

Re: [PyMOL] comments ?

I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, !-- or -- characters but everything fails. use '#' but on a line of its own not at the end of line containing a pymol command, like this: # color 1DHS in red color red, 1DHS '#' seems to be

Re: [PyMOL] comments ?

'#' seems to be incorrect: It is not incorrect. If you post your script and how you use it we might be able to help. Also, if you have something in you $HOME/.pymolrc or $HOME/.pymolrc.py you should try temporarily moving these files elsewhere and trying again. Something may have gone wrong

[PyMOL] Bonds or lines with user set colors..

Hey I'm trying to make bonds.. or lines/connections between the C-alphas of various residues. I found that bond can do this, however the bond color is adopted from the color of the atoms that the bond connects. Is there a way to isolate a bond object and set the color of it independent of the

Re: [PyMOL] Pymol Scenes to Movies

Hi Chris, I've been using this function a lot in my teaching. You don't need to convert it to a movie, just save session as a .psw (pymol show file) with the scenes embedded in there. Then from within powerpoint just set up a hyperlink (Insert hyperlink) and point it to the .psw file. In

[PyMOL] view dimeric structure

Hello, I am trying to view the dimeric structure of the aspartate receptor (1VLS) in pymol. The biological moleclule is a dimer made up of two four helix bundles related by a two fold axis. I downloaded the co ordinates for the biological molecule from the pdb website (filename:1VLS.pdb1).