[PyMOL] curved cylinders in PyMOL

2008-09-07 Thread Michael Oldham
I wish to depict my protein with a cylindrical cartoon representation, but I wish to draw the cylinders so they contour to the shape of bent and curved helices instead of making a regular cylinder between the two residues indicated. Can this be done in PyMOL. Thanks

Re: [PyMOL] curved cylinders in PyMOL

2008-09-07 Thread DeLano Scientific
Michael, Sorry, this isn't something PyMOL is presently capable of doing. Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -Original Message- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net]

[PyMOL] fill a cavity with a closed polygon

2008-09-07 Thread Jed Goldstone
Is it possible to fill a cavity (e.g. a CASTp-derived one) with discrete spheres (as per the examples on the CASTp site obtained with RasMol) or a closed polygon (as visualized by ICM) rather than a surface mapped to the residue surfaces?