Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 9

2010-02-19 Thread Kin Sing Stephen Lee
Thank you Daniel, I finally found the Autodock tool path in Mac however, i got another error message: ImportError: No module named MolKit Is there any solution for this in Mac? Thank you very much Sing On Feb 18, 2010, at 10:56 AM, pymol-users- requ...@lists.sourceforge.net wrote: Send

[PyMOL] Save movie not working

2010-02-19 Thread Kent Rossman
Hi Delano, When I try to save an MPEG from the save movie menu, pymol works on writing out the movie, then i get an error that says mpeg_encode.exe has encounteres a problem and has to close. A file is written with 0 bytes. There was also an error that mpeg_encode was being used by another

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-19 Thread Kin Sing Stephen Lee
Dear all, Sorry I fixed the prepare_ligand4.py problem. However, when I try to do the autodock in the plugin, the plugin cannot recognize the receptor so there is no choice available in the receptor in the docking page. If I click autogrid or autodock, the program shows no response. Is

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-19 Thread Daniel Seeliger
Sing, if there is no receptor listed you probably didn't generate one. You can do that on the Generate Receptor page. -Daniel On Friday 19 February 2010 07:13:58 pm Kin Sing Stephen Lee wrote: Dear all, Sorry I fixed the prepare_ligand4.py problem. However, when I try to do the

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-19 Thread Shiven Shandilya
Hello Sing, Perhaps going over the basic tutorial will help make things clear: http://wwwuser.gwdg.de/~dseelig/plugin_tutorial.html Best, Shiven On Fri, Feb 19, 2010 at 1:13 PM, Kin Sing Stephen Lee s...@chemistry.msu.edu wrote: Dear all, Sorry I fixed the prepare_ligand4.py problem.