Troels,
Commonly I run pymol scripts by means of
run script.py
or
@ script.py
from PyMol shell!
then I use script_command ( e.g findSeq ) and further script syntax for my
tasks
e.g findSeq s.g 1f88
works perfect but
the above command for the ensemmble of pdbs give me error.
James
Dear Pymol users,
I wrote a Pymol script to export a scene in Pymol to GLmol,
a molecular viewer for Web browsers written in WebGL/Javascript.
With this script, you can publish your Pymol scene for Web page.
Visitors can rotate, zoom the molecule on the page.
Compared to exporting polygon
Dear James.
That is because there are different ways, how to get functions available in
Python.
Either you can import a script.py or you can execute it.
If you execute the script.
In Python, you would do: *execfile(script.py)*
In PyMOL, a shortcut to this is: *run script.py OR
That looks very interesting.
I needed to make my shortcut to chrome look like this:
/opt/google/chrome/google-chrome --enable-webgl %U
Your example page is extremely fast, and the View mode change
is working perfectly and fast.
This is the first version of PyMOL-to-webpage i have seen, which
Dear All,
The list of items for which there are settings is very long, and
for each there are several possible numerical values which can be
entered. Is there anywhere a list of all the settings, what they do,
what values are permissible, and what those values mean?
Thanks,
PCK
--
There is now a description available at:
http://pymolwiki.org/index.php/Pymol2glmol
If you use a webpage for teaching, you should really try this plugin out.
/Troels Linnet
2012/1/16 Takanori Nakane t.nak...@mail.mfour.med.kyoto-u.ac.jp
Dear Pymol users,
I wrote a Pymol script to export
Nakane-san,
Nice work! WebGL is certainly an interesting technology that will
enable the creation of a whole new set of applications.
Cheers,
-- Jason
On Mon, Jan 16, 2012 at 10:45 AM, Takanori Nakane
t.nak...@mail.mfour.med.kyoto-u.ac.jp wrote:
Dear Pymol users,
I wrote a Pymol script to
Hi Peter,
There is no such list. The closest thing we have for the 700+ settings
is on the PyMOLWiki (http://www.pymolwiki.org/index.php/Settings).
And, yes, that's a terrible page itself. Currently about 200 settings
are documented there.
Cheers,
-- Jason
On Mon, Jan 16, 2012 at 3:29 PM,
Troels, thanks again for so detailed explanation
Firstly I've tried to use IMPORT SCRIPT and all of the above commands works
now :)
Now I'd like to understand the main sytnax of the findseq script in more
detailes.
E.g I have the set of homologues protein from wich I'd like to find triplet
