Re: [PyMOL] Maximum number of objects/menu items in internal GUI ? machine has lots of RAM and big GPU

2012-03-15 Thread hari jayaram
Hi Jason , Thanks for your email. I tried this with script with around 50 pdbs - that would be around 200 objects in the final session present in 50 groups. The proteins are all in the 14-18 kDa range and monomeric. My async_builds is off My auto_defer_builds is set at 500 I used two versions :

[PyMOL] AttributeError: 'module' object has no attribute 'super'

2012-03-15 Thread Shane Neeley
AttributeError: 'module' object has no attribute 'super' I am trying to run color_by_mutation http://www.pymolwiki.org/index.php/Color_By_Mutations But I get that error. Maybe my version of Mac PyMol from 2006 doesn't have that superimpose command? How do I fix this? Thank you. Shane

Re: [PyMOL] AttributeError: 'module' object has no attribute 'super'

2012-03-15 Thread Thomas Holder
Hi Shane, if you have a version 0.99 or older then there is no super command. That old version also lacks other features which are required by that script. So the only solution is to upgrade. Cheers, Thomas On 03/15/2012 05:47 PM, Shane Neeley wrote: AttributeError: 'module' object has no

Re: [PyMOL] fink install pymol help

2012-03-15 Thread S. Shunmugasundararaj
Try  fink install pymol-py27   From: Shane Neeley shane.nee...@gmail.com To: pymol-users@lists.sourceforge.net Sent: Thursday, March 15, 2012 4:53 PM Subject: [PyMOL] fink install pymol help I installed Fink on my mac because apparently it has pymol as a

Re: [PyMOL] fink install pymol help

2012-03-15 Thread Shane Neeley
Thanks Guys I just had to self update fink. On Thu, Mar 15, 2012 at 4:46 PM, Shane Neeley shane.nee...@gmail.comwrote: Hi, S.S. Thanks for your help. It says, Failed: no package found for specification 'pymol-py27'! null-b88d121ba616:~ chimpsarehungry$ fink list pymol Information about 312

Re: [PyMOL] fink install pymol help

2012-03-15 Thread Shane Neeley
I've installed all of the packages for pymol-py27 with fink. And my terminal went back to normal. Now what? How do I make PyMol an application? On Thu, Mar 15, 2012 at 5:28 PM, Shane Neeley shane.nee...@gmail.comwrote: Thanks Guys I just had to self update fink. On Thu, Mar 15, 2012 at 4:46