Re: [PyMOL] Valence bonding ray trace in batch mode

2017-07-04 Thread Thomas Holder
Hi Gianluca, You get the sphere with stick_ball=on. It's unexpected that batch mode and GUI mode give different results. Could it be that you have the stick_ball setting in a (directory specific) pymolrc file, and/or do you pass -k flag (ignores pymolrc files) in batch mode? Cheers, Thomas

Re: [PyMOL] Selection markers not shown

2017-07-04 Thread András Ferenc WACHA
Dear PyMOL Users, I have solved the problem by setting use_shaders to False. The problem is probably caused by the incomplete/outdated OpenGL implementation of the graphics driver/device. Best regards, Andras Wacha On 07/03/2017 11:08 AM, András Ferenc WACHA wrote: > Dear PyMOL Users, > > I'm