Hi,
I also had some problem with this. The "trick", I believe, is to
compile/install pymol with:
python2.7 setup.py build install --home=path_to_pymol/
--install-lib=path_to_pymol/modules/ --install-scripts=path_to_pymol/
The part you are interested in is the modules. I needed to install
something called msgpack-c before compiling pymol.
In addition, you need to add path_to_pymol/modules/ to your python
paths. You can add these to the .bashrc file:
export PYMOL_PATH=path_to_pymol/
export PYTHONPATH=$PYTHONPATH:$PYMOL_PATH/modules:
Have fun!
Leandro
On Tue, Jul 25, 2017 at 8:27 PM, Vivien Schoonenberg <
vivienschoonenb...@gmail.com> wrote:
> Hi all,
>
>
>
> I have been trying for a while, but cannot seem to figure out how to
> install pymol on my unix server so that I can run pymol from within a
> python script. (So that I can use it with the command ‘ import pymol’. I
> did manage to do this on my windows with a wheel, but don’t know how to
> solve it on my unix system)
>
>
>
> Any tips would be very welcome!
>
>
>
> Thanks,
>
> Vivien
>
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