[PyMOL] How to manually define the lower and upper limit of vacuum electrostatics?

2019-09-12 Thread sunyeping via PyMOL-users
Dear all, I am trying to compare the vacuum electrostatics of three related proteins. I loaded them in pymol and use "Action>generate>vacuum electrostatics menu to generate the vacuum electrostatics of the three proteins. I find that the lower and upper limit of the gradient bars generated

Re: [PyMOL] How to manually define the lower and upper limit of vacuum electrostatics?

2019-09-12 Thread Marko Hyvonen
Hi Yeping, Click on the bar object "Action" > "Levels" for a few preset levels/scales. hth, Marko On 12/09/2019 08:03, sunyeping via PyMOL-users wrote: Dear all, I

[PyMOL] PyMol: incomplete replacement of b- and q-factors

2019-09-12 Thread Heffron, Joseph
Hello all, I am trying to color several proteins by different factors, e.g., distance from a given point (here the origin). To do this, I replace the q-factor (or b-factor) with my variable of choice. However, most of my files have one or a few residues that are for some reason not affected by

Re: [PyMOL] How to manually define the lower and upper limit of vacuum electrostatics?

2019-09-12 Thread sunyeping via PyMOL-users
Hello, Marko, Think you for your reply. I can use the bar object "Action" > "Levels" to set the levels/scales to -100~100, but could you tell me what are the units for the values? Best regards -- From:Marko Hyvonen Sent At:2019