Re: [PyMOL] choice of color in util.cbc

2020-07-14 Thread Thomas Holder
Hi Charles, The `first_color` argument is only active with `legacy=1`. util.cbc 6uwz, first_color=1, legacy=1 Other options for coloring by chain: spectrum chain, rainbow, 6uwz spectrum chain, blue green red yellow, 6uwz Hope that helps. Cheers, Thomas > On Jul 14, 2020, at 7:18

Re: [PyMOL] Reading Cell Dimensions from GROMACS XTC file

2020-07-14 Thread Thomas Holder
Hi Dan, Showing different cells for each state is currently not implemented, but I think it would not be too difficult to add support for that. I've opened a feature request ticket: https://github.com/schrodinger/pymol-open-source/issues/114 Cheers, Thomas > On Jul 13, 2020, at 4:20 PM,

Re: [PyMOL] choice of color in util.cbc

2020-07-14 Thread Chen, Qiang
Thanks! This works well. "Spectrum chain" is more flexible and powerful in this case. Charles From: Thomas Holder Sent: Tuesday, July 14, 2020 2:24 PM To: Chen, Qiang Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] choice of color in util.cbc Hi

[PyMOL] choice of color in util.cbc

2020-07-14 Thread Chen, Qiang
Hi, Pymol Users Is it possible to choose different color pattern when using util.cbc? Wiki says I could use the following to choose the first_color util.cbc 6uwz, first_color=1, quiet=0 6uwz is just an example of a pentameric protein. However, there is no change when specify any other number

[PyMOL] Pymol Will Not Open PDBs on a New HDD

2020-07-14 Thread Michael Bielecki
Hi, I recently moved my documents to a new hard drive disk. Interestingly, Pymol will not open any pdb's in the new location. When the same file was moved outside the new disk the problem goes away. Other visualization programs, e.g. Chimera, work fine. I'm working on Ubunut 20.04, and I'm