Re: [PyMOL] Save command output to a file in pymol

2017-01-13 Thread Academic Research
This can be done using normal python file i/o: f=open("ss.txt","w") iterate n. CA, f.write(resi + ':' + ss+"\n") f.close() On Fri, Jan 13, 2017 at 10:38 AM, Academic Research <ac.resea...@icloud.com> wrote: That would be good as well, How? keep in mind

Re: [PyMOL] Save command output to a file in pymol

2017-01-13 Thread Academic Research
rminal On 01/13/2017 10:34 AM, Academic Research wrote: Pymol Professionals I need your help, I have the following command: iterate n. CA, print resi + ':' + ss I use this command in pymol to print out each residue number and its corresponding secondary structure. The command prin

[PyMOL] Save command output to a file in pymol

2017-01-13 Thread Academic Research
Pymol Professionals I need your help, I have the following command: iterate n. CA, print resi + ':' + ss I use this command in pymol to print out each residue number and its corresponding secondary structure. The command prints out the result in pymol itself. My question is: How can I save

[PyMOL] ray 2400 (NOT ray_trace) each frame of a movie

2017-06-29 Thread Academic Research
So far there is only info about how to "ray_trace" each frame of a movie while exporting to .png images. My question: How can I "ray 2400" each image (regardless of my computer screen size - because I have a small computer) so i can get very high resolution images that i can combine

[PyMOL] Radius of Gyration

2018-03-10 Thread Academic Research
Dear everyone, The following link has a script about calculating the radius of gyration for a protein: https://pymolwiki.org/index.php/Radius_of_gyration Can someone explain the steps of the calculation? what are the rr and mm values? in the comments it just says (First part of the sum