[PyMOL] Re: fitting residues

2002-07-25 Thread Jason Maynes
Hello: I am trying to color residues off a cartoon loop and want to color the sticks version of the residue down to the Ca, but not the Ca itself (ie. the residue and the cartoon are different colors). The problem is that if I color the Ca, then that section of the cartoon also gets colored. If

Re: [PyMOL] Polypeptide conformation restriction

2002-08-01 Thread Jason Maynes
Hello: To show the allowed torsion angles, run your protein through procheck (available at http://www.ccp4.ac.uk/main.html), this will show the allowed areas. I would say that the convergence of an MD simlulation cannot be told by torsion angles since the protein conformation with the most

[PyMOL] grasp surfaces

2002-08-14 Thread Jason Maynes
Hello: This might have been asked before but is there anyway to load an electrostatic surface from grasp into pymol? Cheers, JTM * Jason Thomas Maynes MD/PhD Program Faculty of Medicine University of Alberta ja...@biochem.ualberta.ca *

[PyMOL] surfaces

2002-08-14 Thread Jason Maynes
Hello: Okay, I got the surface from Grasp read in by ungrasping it in Raster3d. Now the read in surface loses its electrostatic potential colouring - is there any way to fix this? Cheers, JTM * Jason Thomas Maynes MD/PhD Program Faculty of Medicine University of Alberta