Re: [PyMOL] [Apbs-users] Windows/Cannot generate .dx file at APBS

2007-01-16 Thread Nathan Baker
Hi Georgios -- I am a newcomer in this field and the use of APBS. I am trying to produce an electrostatic potential map for a protein surface and I am using Windows XP. Although I have installed succesfully Pymol v0.99, APBS v0.4.0 and the M.Lerner's plug-in,following Lerner's

Re: [PyMOL] [Apbs-users] Strange behaviour with APBS

2008-09-17 Thread Nathan Baker
Hi Warren -- The PQR format (which doesn't really have a standard) is basically just whitespace delimited. I'm curious, though -- why would a PyMOL APBS invocation ever see the PDB file? Wouldn't a user first convert it to PQR with PDB2PQR (ideally) or with PyMOL's built-in

Re: [PyMOL] [Apbs-users] Strange behaviour with APBS

2008-09-18 Thread Nathan Baker
Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -Original Message- From: Nathan Baker [mailto:nathanaba...@mac.com] Sent: Wednesday, September 17, 2008 6:28 PM To: DeLano Scientific Cc: gilles.tr...@cgm.cnrs-gif.fr; pymol-users@lists.sourceforge.net; apbs-us

Re: [PyMOL] [Apbs-users] Plan for FreeMOL: APBS/PQR2PDB + MENGINE + MPEG movie creation

2008-09-18 Thread Nathan Baker
...@lists.sourceforge.net] On Behalf Of Nathan Baker Sent: Thursday, September 18, 2008 11:54 AM To: DeLano Scientific Cc: apbs-us...@lists.sourceforge.net; gilles.tr...@cgm.cnrs-gif.fr; pymol- us...@lists.sourceforge.net Subject: Re: [PyMOL] [Apbs-users] Strange behaviour with APBS Hi Warren