Re: [PyMOL] PovRay

2011-03-24 Thread Tsjerk Wassenaar
Hi Ian, As this may be of broader interest, I forward it to the pymol user list too. You can clip the scene using an intersection. Let's say that you have the object you want to clip stored as a povray include file object.inc. Then you can get the clipped object as: //### pymol_object = union {

Re: [PyMOL] POVRAY Usage

2009-05-18 Thread Thomas Stout
: [PyMOL] POVRAY Usage Hi Tom, Just as Robert says, the quote should be dropped. Maybe you should've had just one coffee more, but I should also have been more careful typing. Apparently I usually automatically start of with typing strings after .write( ;) Sorry about that. Tsjerk On Fri, May

Re: [PyMOL] POVRAY Usage

2009-05-16 Thread Tsjerk Wassenaar
(cmd.get_povray()[1]) -Original Message- From: Tsjerk Wassenaar [mailto:tsje...@gmail.com] Sent: Thu 5/14/2009 1:47 PM To: Sean Law Cc: pymol-users Subject: Re: [PyMOL] POVRAY Usage Hi Sean, Unfortunately, getting a good image through POV-Ray requires editing the POV-Ray file

Re: [PyMOL] POVRAY Usage

2009-05-15 Thread Thomas Stout
: Tsjerk Wassenaar [mailto:tsje...@gmail.com] Sent: Thu 5/14/2009 1:47 PM To: Sean Law Cc: pymol-users Subject: Re: [PyMOL] POVRAY Usage Hi Sean, Unfortunately, getting a good image through POV-Ray requires editing the POV-Ray file. You can write the scene to disk with the following commands pov

Re: [PyMOL] POVRAY Usage

2009-05-15 Thread Robert Campbell
Hi Tom On Fri, 15 May 2009 14:57:36 -0700, Thomas Stout tst...@exelixis.com wrote: What version of PyMOL does this work with? I've been trying your commands with versions 1.1 and 1.2b and while PyMOL reports that the primitives have been processed, nothing is written to the file protein.pov

[PyMOL] POVRAY Usage

2009-05-14 Thread Sean Law
Hi All, While ray tracing a scene with 10 x-large proteins in grid mode at 3600, 3600 (width, height) I ran out of RAM (2 GB). I tried it again by writing everything into a script and using pymol -qc which still ran out of memory. I read somewhere that POVRAY is less of a memory hog so I

Re: [PyMOL] POVRAY Usage

2009-05-14 Thread Tsjerk Wassenaar
Hi Sean, Unfortunately, getting a good image through POV-Ray requires editing the POV-Ray file. You can write the scene to disk with the following commands pov=open(protein.pov,w) pov.write(cmd.get_povray()[0]) pov.write(#include \povray.inc\) pov.close()

Re: [PyMOL] POVRAY Usage

2009-05-14 Thread Tsjerk Wassenaar
(according to the povray website) but you've only specified one.  Should I just repeat the same axis twice? Sean Date: Thu, 14 May 2009 22:47:54 +0200 Subject: Re: [PyMOL] POVRAY Usage From: tsje...@gmail.com To: magic...@hotmail.com CC: pymol-users@lists.sourceforge.net Hi Sean

[PyMOL] povray image mapping and default pigments

2006-04-18 Thread Seth Harris
This is for the povray gurus out there... Occasionally I muck around with the time-consuming practice of trying to map pictures onto molecular surfaces with povray. I had this working to some extent, but something has changed (I think with the povray file format produced by pymol make_pov where

[PyMOL] Povray macro

2005-02-17 Thread T.A.Wassenaar
Hi Guys, For those interested, I've made a macro for Povray which allows to transform the Pymol povray output back to model space, or to transform povray models to Pymols camera space. After #including pymolmacro.inc call PYMOL_VIEW() with the eighteen floats from cmd.get_view() to set

[PyMOL] Povray macro (with attachment)

2005-02-17 Thread T.A.Wassenaar
Okay, smart.., forgot the attachment and took a while to realize it :) On Thu, 17 Feb 2005 11:21:53 +0100 T.A.Wassenaar t.a.wassen...@rug.nl wrote: Hi Guys, For those interested, I've made a macro for Povray which allows to transform the Pymol povray output back to model space

Re: [PyMOL] Povray

2004-02-19 Thread Robert Campbell
* Tsjerk Wassenaar t.a.wassen...@chem.rug.nl [2004-02-19 04:30] wrote: Hi Guys, I seem to have some trouble rendering with povray. The render starts and finishes fine, and the image is created, but Pymol crashes with a segmentation fault as soon as the rendering is done. The image is not

[PyMOL] POVRay output

2003-04-15 Thread Armand Tepper
Dear all, I am a new user of both pymol and this email list so I apologize when the items below already have been discussed earlier. I like the graphic output of the program very much! I am mainly interested in generating POV output files from Pymol instead of using the built-in renderer.

Re: [PyMOL] POVRay output

2003-04-15 Thread Robert Campbell
* Armand Tepper wjwtep...@yahoo.com [2003-04-15 04:09] wrote: Dear all, 1) In a future version of Pymol, would it be possible to parametrize the POVray output such that all textures, finishes etc. are declared once as variables (e.g. something like #declare carbon_texture = texture) ?

[PyMOL] PovRay file export

2003-02-26 Thread andreas bohne
Hi, how to write the PovRay file out? (I do not want to embed PoyRay as the renderer.) Bye andreas -- +++ GMX - Mail, Messaging more http://www.gmx.net +++ Bitte lächeln! Fotogalerie online mit GMX ohne eigene Homepage!

Re: [PyMOL] PovRay file export

2003-02-26 Thread Robert Campbell
Hi, On 2003-02-26 14:54 Andreas wrote: how to write the PovRay file out? (I do not want to embed PoyRay as the renderer.) I also don't use povray directly as I like to edit the povray input file. I use the following script: # make_pov.py