Hi Ian,
As this may be of broader interest, I forward it to the pymol user list too.
You can clip the scene using an intersection. Let's say that you have
the object you want to clip stored as a povray include file
object.inc. Then you can get the clipped object as:
//###
pymol_object = union {
: [PyMOL] POVRAY Usage
Hi Tom,
Just as Robert says, the quote should be dropped. Maybe you should've had just
one coffee more, but I should also have been more careful typing. Apparently I
usually automatically start of with typing strings after .write( ;)
Sorry about that.
Tsjerk
On Fri, May
(cmd.get_povray()[1])
-Original Message-
From: Tsjerk Wassenaar [mailto:tsje...@gmail.com]
Sent: Thu 5/14/2009 1:47 PM
To: Sean Law
Cc: pymol-users
Subject: Re: [PyMOL] POVRAY Usage
Hi Sean,
Unfortunately, getting a good image through POV-Ray requires editing
the POV-Ray file
: Tsjerk Wassenaar [mailto:tsje...@gmail.com]
Sent: Thu 5/14/2009 1:47 PM
To: Sean Law
Cc: pymol-users
Subject: Re: [PyMOL] POVRAY Usage
Hi Sean,
Unfortunately, getting a good image through POV-Ray requires editing
the POV-Ray file. You can write the scene to disk with the following
commands
pov
Hi Tom
On Fri, 15 May 2009 14:57:36 -0700, Thomas Stout tst...@exelixis.com wrote:
What version of PyMOL does this work with? I've been trying your commands
with versions 1.1 and 1.2b and while PyMOL reports that the primitives have
been processed, nothing is written to the file protein.pov
Hi All,
While ray tracing a scene with 10 x-large proteins in grid mode at 3600, 3600
(width, height) I ran out of RAM (2 GB). I tried it again by writing
everything into a script and using pymol -qc which still ran out of memory. I
read somewhere that POVRAY is less of a memory hog so I
Hi Sean,
Unfortunately, getting a good image through POV-Ray requires editing
the POV-Ray file. You can write the scene to disk with the following
commands
pov=open(protein.pov,w)
pov.write(cmd.get_povray()[0])
pov.write(#include \povray.inc\)
pov.close()
(according to the povray website) but you've only
specified one. Should I just repeat the same axis twice?
Sean
Date: Thu, 14 May 2009 22:47:54 +0200
Subject: Re: [PyMOL] POVRAY Usage
From: tsje...@gmail.com
To: magic...@hotmail.com
CC: pymol-users@lists.sourceforge.net
Hi Sean
This is for the povray gurus out there...
Occasionally I muck around with the time-consuming practice of trying to map
pictures onto molecular surfaces with povray.
I had this working to some extent, but something has changed (I think with
the povray file format produced by pymol make_pov where
Hi Guys,
For those interested, I've made a macro for Povray which
allows to transform the Pymol povray output back to model
space, or to transform povray models to Pymols camera
space.
After #including pymolmacro.inc call PYMOL_VIEW() with
the eighteen floats from cmd.get_view() to set
Okay, smart.., forgot the attachment and took a while to
realize it :)
On Thu, 17 Feb 2005 11:21:53 +0100
T.A.Wassenaar t.a.wassen...@rug.nl wrote:
Hi Guys,
For those interested, I've made a macro for Povray which
allows to transform the Pymol povray output back to model
space
* Tsjerk Wassenaar t.a.wassen...@chem.rug.nl [2004-02-19 04:30] wrote:
Hi Guys,
I seem to have some trouble rendering with povray. The render starts and
finishes fine, and the image is created, but Pymol crashes with a
segmentation fault as soon as the rendering is done. The image is not
Dear all,
I am a new user of both pymol and this email list so I
apologize when the items below already have been
discussed earlier. I like the graphic output of the
program very much! I am mainly interested in
generating POV output files from Pymol instead of
using the built-in renderer.
* Armand Tepper wjwtep...@yahoo.com [2003-04-15 04:09] wrote:
Dear all,
1) In a future version of Pymol, would it be possible
to parametrize the POVray output such that all
textures, finishes etc. are declared once as variables
(e.g. something like #declare carbon_texture =
texture) ?
Hi,
how to write the PovRay file out? (I do not want to embed PoyRay as the
renderer.)
Bye andreas
--
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Hi,
On 2003-02-26 14:54 Andreas wrote:
how to write the PovRay file out? (I do not want to embed PoyRay as the
renderer.)
I also don't use povray directly as I like to edit the povray input
file.
I use the following script:
# make_pov.py
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