Re: [PyMOL] Re: fitting residues

2002-07-26 Thread Gareth Stockwell
Jason,

I think the solution is to create a copy of the object, then render one 
copy as cartoon, and the other as sticks.  The colouring will then be 
independent.

By the way, does anyone kwow if it is possible to invoke the command 
window after startup?  I normally launch PyMOL with -x, but sometimes 
later need the command window, and have to restart the program.

Gareth


On Thu, 25 Jul 2002, Jason Maynes wrote:

 Hello:
 
 I am trying to color residues off a cartoon loop and want to color the
 sticks version of the residue down to the Ca, but not the Ca itself
 (ie. the residue and the cartoon are different colors).  The
 problem is that if I color the Ca, then that section of the cartoon also
 gets colored.  If I don't color the Ca, then the cartoon loop color comes
 halfway up the bond to the Cbeta.  Does anybody have any suggestions, that
 is if I haven't made the question so convoluted you can understand it.
 
 Thanks in advance.
 
 Cheers,
 JTM
 
 *
 Jason Thomas Maynes
 MD/PhD Program
 Faculty of Medicine
 University of Alberta
 ja...@biochem.ualberta.ca
 *
 
 
 
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---
 Gareth Stockwell
 PhD student, Thornton Group
 EMBL - European Bioinformatics Institute
 Wellcome Trust Genome Campus
 Hinxton
 Cambridge CB10 1SD gar...@ebi.ac.uk
 Tel 01223 492548   http://www.ebi.ac.uk/~gareth




[PyMOL] Re: fitting residues

2002-07-25 Thread Jason Maynes
Hello:

I am trying to color residues off a cartoon loop and want to color the
sticks version of the residue down to the Ca, but not the Ca itself
(ie. the residue and the cartoon are different colors).  The
problem is that if I color the Ca, then that section of the cartoon also
gets colored.  If I don't color the Ca, then the cartoon loop color comes
halfway up the bond to the Cbeta.  Does anybody have any suggestions, that
is if I haven't made the question so convoluted you can understand it.

Thanks in advance.

Cheers,
JTM

*
Jason Thomas Maynes
MD/PhD Program
Faculty of Medicine
University of Alberta
ja...@biochem.ualberta.ca
*