PyMOL 1.7.4 has a Python API function to access a map as a numpy array:
cmd.get_volume_field, it takes the name of a map or volume object as its first
argument. PyMOL doesn't support any map formal for export, but with this
function you could write your own routine.
data = cmd.get_volume_field(pseudomap)
# grid size
# world-space dimensions
# raw data
Hope that helps.
On 09 Jan 2015, at 04:19, Daniel Larsson lars...@xray.bmc.uu.se wrote:
I have created a pseudo-low resolution electron density map from a PDB-file
using the map_new command. Is it possible to export or save that map to a
file? Any format should be fine.
PyMOL Principal Developer
New Year. New Location. New Benefits. New Data Center in Ashburn, VA.
GigeNET is offering a free month of service with a new server in Ashburn.
Choose from 2 high performing configs, both with 100TB of bandwidth.
Higher redundancy.Lower latency.Increased capacity.Completely compliant.
PyMOL-users mailing list (PyMOLemail@example.com)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users