Thanks Clotilde again.
I switched the graphics card driver and it has fixed the problem.
The switch I made was from Nouveau display driver to Nvidia dreiver.
Thanks,
Abhinav
__
Abhinav Kumar, Ph.D.
The Joint Center for Structural Genomics
MS99, SLAC National Accelerator Laboratory
2575 Sand Hill Rd, Menlo Park, CA 94025
(650) 926-2992
On 05/21/2014 08:44 AM, Clotilde LowKam wrote:
Hello,
probably a driver/graphic card problem. Maybe trying the legacy driver
for your card could help.
Clotilde
2014-05-21 11:26 GMT-04:00 Abhinav Kumar abhin...@slac.stanford.edu
mailto:abhin...@slac.stanford.edu:
Hi,
I installed pymol ( pymol-v1.7.0.5-Linux-x86_64.tar.bz2) on my
ubuntu (12.04 LTS) desktop and this was working fine.
Later, I upgraded my Ubuntu to 14.04 LTS and now pymol has become
extremely sluggish. Even rotating a small molecule like ATP takes
a while.
Any suggestions on how to fix this?
Coot and rasmol are not affected by this Ubuntu upgrade.
Thanks,
Abhinav
__
Abhinav Kumar, Ph.D.
The Joint Center for Structural Genomics
MS99, SLAC National Accelerator Laboratory
2575 Sand Hill Rd, Menlo Park, CA 94025
(650) 926-2992 tel:%28650%29%20926-2992
On 05/13/2014 10:43 AM, Thomas Holder wrote:
Greetings,
We'd like to announce the release of Incentive PyMOL 1.7.0.5, which is a
bugfix release. Applicable bugfixes have also been pushed to the sourceforge
SVN repository as Open-Source PyMOL 1.7.1.3 (SVN rev 4076).
Fixed bugs include:
Incentive PyMOL (for licensed users):
- don't disable all shaders if geometry shaders are not available
- many z-depth issues for labels and connectors in immediate, shader, and
ray tracing (all renderings should now look almost exactly the same)
- background in front of text with use_shaders=0
- label picking broken with use_shaders=0
- character rendering in ray tracing
- clipped text in multi-line labels (shader on and off)
Open Source and Incentive PyMOL:
- cartoon memory leak
- CGO colors ignored with ALPHA
- hidden groups flash in scene based movies
- A find polar contact just intra-side chain broken
- scene auto, update broken
- small solvent_radius crashes Surface generation
- grid_mode support for volumes
Some of these changes have been in the SVN repository for a couple of weeks.
Download:
Installers for Incentive PyMOL:http://pymol.org/dsc/ip/
Open Source:http://sourceforge.net/p/pymol/
Cheers,
The PyMOL Team at Schrödinger
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